| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1371 |
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| Symbol | |
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| ID | 7973052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1491637 |
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| End bp | 1492875 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791969 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002943288 |
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| Protein GI | 239814378 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.070689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAATT CACCCAGCAG CAACCCCTGC ATCGACGATC TTGCGCCCGA ACCCGCCAGG
ACCGCCCGCT CCGCCTGGCT GGCGGTCGGC TCGATCGCCG TCGGCACCTT TGCCATGGTC
TCGACCGAGT TCATGCCCAT CGGCCTTTTG ACCGACATCG CCCGCGGCTT GAACGTGTCC
GACGGCACGG CCGGCCTGAT GATCACCATG CCCGGCGTGC TGGCGGCCTT TGCCGGCCCT
GCGCTCATCG TCGCTTCGGG CCGGCTCGAC CGGCGCACCG TGCTGATCGC GCTCACCACC
TTGCTGATCG CCTCGAACCT GCTGGCCGCC TTTGCGCCCA ACTTCGCGAC CATGCTGGTC
GCGCGCCTGA TGCTCGGCCT GTGCGTGGGC GGCTTCTGGA CCTTTGCGCC GGCCGCCGCC
ACGCAGCTGG TGCCGGACGC CTCCAAGGCG CGCGCCATGT CGCTGGTGCT GGCGGGCGTG
TCCGCCGCCA CCGTGCTGGG CGTGCCCGCG GGTTCGTTCC TGGGCACGCA GTTCGGCTGG
CGCGCCTCGT TCGCGGTGAC CGGCGCGCTC GCGGCCGCGG TGCTGCTGGT GCAGCTGTGG
CTGCTGCCCG CGATACCGCC GGTGCGCGCC ATCGGTGCGC GCGACCTGCT CACGCCGCTC
ACGCGGCGCA TGGCGCAGGT CGGGCTGCTC GCGGTGCTGT TCTTCATTGC CGGCCACTTC
GCGGCCTACA CCTACCTGAA GCCGCTGCTG CAGCAGGTGT TCGGGCTCGC GCCCAACTCG
GTCTCGACGC TGCTGCTGGT GTATGGCGCG GTGGGCTTTG TCGGCACCTT CCTCGGCGGC
AGCCTGGTGG CGCGCAGCGT GCGCGGCACC ACCCTGCTGG CGGCGCTGAT GCTCGCCACC
GCGCTCCTGC TGTCGACGGT GATCGGCTCC GGCTTCGTGC CCGGCGCGGT GGTGGTCGTG
ATCTGGGGCG TGGCCTTCGG CCTGATCCCG GTCGCGCTCA CGGGCTGGAT GATGGAGGCC
GTGCCCGACG CGCCCGAAGC CGGCCAGGCC CTGCTCGTGA GCGGCTTCCA GGTGGCAATC
GCTTCCGGCG CGCTGATCGG CGGCGTGACG GTCGACAACC ACGGCATCTC CAGCGCGATG
GTGCTCAGCG GCGTGCTGGT GCTGATCGCG GCGCTGATCG TCAGCACGCT GGGCCGGGCG
CGCGGCGGCG CCGCGCTGGC TACTTCTTCG GCCGAGTAG
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| Protein sequence | MMNSPSSNPC IDDLAPEPAR TARSAWLAVG SIAVGTFAMV STEFMPIGLL TDIARGLNVS
DGTAGLMITM PGVLAAFAGP ALIVASGRLD RRTVLIALTT LLIASNLLAA FAPNFATMLV
ARLMLGLCVG GFWTFAPAAA TQLVPDASKA RAMSLVLAGV SAATVLGVPA GSFLGTQFGW
RASFAVTGAL AAAVLLVQLW LLPAIPPVRA IGARDLLTPL TRRMAQVGLL AVLFFIAGHF
AAYTYLKPLL QQVFGLAPNS VSTLLLVYGA VGFVGTFLGG SLVARSVRGT TLLAALMLAT
ALLLSTVIGS GFVPGAVVVV IWGVAFGLIP VALTGWMMEA VPDAPEAGQA LLVSGFQVAI
ASGALIGGVT VDNHGISSAM VLSGVLVLIA ALIVSTLGRA RGGAALATSS AE
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