| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1337 |
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| Symbol | |
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| ID | 7973018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1453272 |
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| End bp | 1454735 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791935 |
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| Product | transcriptional regulator, GntR family with aminotransferase domain |
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| Protein accession | YP_002943254 |
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| Protein GI | 239814344 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGCAAT CTCCCCGGTT CCGCTATGAA GAAATTGCCG ATTTCGTGGC CGGCCTGGCC
GGCCGCGGCA CGCTGAAGCC GGGCGCGCGG GCGCCGTCGC TGCGCGAGAT CAGCACGCAG
CAGCGCACCA GCCTGAGCAC CGCGGTGCAG GCCTACCGCC TGCTCGAAGA CCGCGGCATC
CTCGAAGTGC GGCCGCAGTC GGGCTACTAC GTCGCCAAGC CGCCGCCCGC GCTGCCCGTG
CCCACCACCG CGCGCCATTC GATCCGGCCT GCCAAGGTGG AGCTCTCGGG CCTGATGCTC
GACCTGCTGA AGCACGCGTC GGACGAAGCC TTCGTGCCGC TCGGCTGCGC CATTCCCAAC
CAGCGGCTGC TGTCTTCCTC CAGGCTCGAC CTCGTGCTGG CCCGCACGGC CCGCGTGAAG
GGCAGCCAGT GCAACACCTA CTCGCCGCCG TACGGCGAGA TGTCGCTGCG GCTGGAGATC
GCGCGCCGCG CGCTGCGCTT CGGACAGGCG CTGGCACCCG ACGACATCGC CATCACCTGC
GGCTGCACCG AGGCGCTGGC GCTCGCGCTC GATGCGGTCA CGGAGCCGGG CGACACGGTC
GCCATCGAGT CGCCGACCTA CTTCGGGCTG CTGCAGGTGC TGCGCGCAAA GAGACTGAAG
GTGGTCGAGC TGCCGACCGA TGCGGACACC GGCGTCGCGG TCGATGCGCT GCGCGAAGTC
GTGGCCTCGG GCAAGGTGCG CGCCTGCGTG CTGGCGTCGA GCTTCAGCAA TCCGCTCGGC
TGCACCATGC CCGAAGAGAA CAAGCGCGCC GTGCTGCGCA TCCTGGCCGA ACACGGCGTG
CCGCTGATCG AGGACGACGT GTACGGCGAC GTCCATTTCG GCGAGGAGCG GCCCCTGCCC
TTCAGCGCGC TCGACACGCA CGACAACGTC ATCTATTGCG GCTCGTTCTC CAAGACGCTC
GCGCCGGGCT ACCGCATCGG CTGGATCGCC ACGCGCCGCC ACATGGCCCG CGTGCTCGAA
ACCAAGTTCG CCACCAGCCT GGCGACGCCG GTGCTGACGC AGGTGGCGCT CGCCACCTTC
CTGTCGAACG GCGACTACGA CCGCCACCTG CGCCGCGTCC GGCGCGAGTT CGCCGACACG
CTGGCCCGCA TGACGCGGGT GATCGAGCAG GCGTTCCCGC CGGGCACCAA GGTGTCGAGG
CCGGCCGGCA ACTTCGTGCT GTGGGTCGAA CTGCCCGAGC CCGCGGACAC GCGGCTCCTG
TTTGCGCAGG CGCTGGAGAA ACGCATCTGC TTTGCGCCCG GCGTGGTGTT CTCGGCCAGC
GGCAAGTACG CCCACTGCCT GCGCCTGAGC GGCGGCCACG GCTGGGACGC GCGCATCGAG
AAGGGCCTGC GCACGCTCGG CGCCATGGCG GTCCGGGCCG CAGGTCTTGC AGGATCAGGC
AAGAAGCCTG TTCGATCCGG ATAA
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| Protein sequence | MSQSPRFRYE EIADFVAGLA GRGTLKPGAR APSLREISTQ QRTSLSTAVQ AYRLLEDRGI
LEVRPQSGYY VAKPPPALPV PTTARHSIRP AKVELSGLML DLLKHASDEA FVPLGCAIPN
QRLLSSSRLD LVLARTARVK GSQCNTYSPP YGEMSLRLEI ARRALRFGQA LAPDDIAITC
GCTEALALAL DAVTEPGDTV AIESPTYFGL LQVLRAKRLK VVELPTDADT GVAVDALREV
VASGKVRACV LASSFSNPLG CTMPEENKRA VLRILAEHGV PLIEDDVYGD VHFGEERPLP
FSALDTHDNV IYCGSFSKTL APGYRIGWIA TRRHMARVLE TKFATSLATP VLTQVALATF
LSNGDYDRHL RRVRREFADT LARMTRVIEQ AFPPGTKVSR PAGNFVLWVE LPEPADTRLL
FAQALEKRIC FAPGVVFSAS GKYAHCLRLS GGHGWDARIE KGLRTLGAMA VRAAGLAGSG
KKPVRSG
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