| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1263 |
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| Symbol | |
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| ID | 7973187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1376926 |
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| End bp | 1377726 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791860 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943180 |
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| Protein GI | 239814270 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0439251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAAGA ACACGCAACC CCGGGCGCCC TTCCTGCTGG CCATCACCGT GCTCGTGAGC
CTCTTCATGA TCGCGCCGAT GCTGCTGTCG GTGATGGCGG GCCTGGTCAA CAACTACAGC
GCGGGCCTGA AGAGCGGCCT CACGCTGCGC TGGCTCGGCG AGGTATGGGA CAACTACGGC
GGCACCGTCG GCTGGTCGAT CGCGCTGGCG CTGGCCTGCG TGGTGGGCAC CGTGCTGCTG
GGCGTGCCCT GCGCCTATGC GCTGGCGCGC AGCCGCTCGC GCGCCGCGCA CATCTTCGAG
GAGCTGCTCA CGCTGCCCGT GGCGGTGCCG GGGCTGGCCA CGGCGCTGGC GCTGATCCTT
GCCTACGGGC AGCTCACGGC CTTCCGCCAG AGCTTCGCCT TCATCCTGGT GGGCCACATG
GTGTTCACGC TGCCGTTCAT GGTGCGTACC GTGAGCTCGG CCTTCCAGCG CGACGACCTG
CTCGCGCTCG AAGAGGCGGC CCGCTCGCTG GGCGCGAACT TCCGCCAGCG CTTCATGGGC
ATCCTCGTGC CCGCGGTGTT CCCCGCCATC GTGGCCGGCA GCCTGATGGT GTTCACGCTC
TCGGTGGGCG AGTTCAACCT CACGTGGATG CTGCACACGC CGCTCACGCG CACCCTGCCC
GTGGGCCTGG CCGACAGCTA TGCCTCGATG CGCATCGAGA TCGGATCGGC CTACACGCTG
GTCTTCTTCG CCGTGATCCT TCCGGTGCTG TGGGGCCTTC AATATCTTGC CAACCTGATG
CAGAAACGCC ATGGAACTTG A
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| Protein sequence | MRKNTQPRAP FLLAITVLVS LFMIAPMLLS VMAGLVNNYS AGLKSGLTLR WLGEVWDNYG
GTVGWSIALA LACVVGTVLL GVPCAYALAR SRSRAAHIFE ELLTLPVAVP GLATALALIL
AYGQLTAFRQ SFAFILVGHM VFTLPFMVRT VSSAFQRDDL LALEEAARSL GANFRQRFMG
ILVPAVFPAI VAGSLMVFTL SVGEFNLTWM LHTPLTRTLP VGLADSYASM RIEIGSAYTL
VFFAVILPVL WGLQYLANLM QKRHGT
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