| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1262 |
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| Symbol | |
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| ID | 7973186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1375875 |
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| End bp | 1376936 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791859 |
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| Product | ABC transporter related |
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| Protein accession | YP_002943179 |
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| Protein GI | 239814269 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0942202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTTG AACGCATTCC CATCGACATC GCGAACTGCG CGAAAACCTA CGCCGACGGC
ACGCGCGGCC TGCTGCCCAC CCACCTGCAT GTGGAGGCCG GCGAGGTGCT TGCGCTGCTC
GGCCCCTCGG GCTGCGGCAA GACCACGCTG CTGCGGCTGA TCGCGGGGCT CGAAGCGCCC
GACGCAGGCA GCCGCATCGT GTTCGGCGGG CAGGACGTCA CCGAGCGGCC GGTGGAGCAT
CGCGGCGTGG GCATGGTGTT CCAGAGCTAT GCGCTGTTTC CGCAGATGAC GGTGGCGGCC
AACATCGGCT ACGGGCTGCG CATCCGCGGC GTGGCGCCGG AAGAGGAAAG GCGCGCGGTG
GGCGAGCTGG TCGACCTGAC GCGCCTGGGC GGCCTGGAGA ACAAGCGCCC CGCCGAGCTC
TCGGGCGGCC AGCGGCAGCG CGTGGCGCTG GCGCGTGCCG TGGCCGTGCG CCCGCGCGTG
CTGCTGCTCG ACGAGCCGCT GGCCGCGCTC GATGCCAAGC TCAAGGAGTC GCTGCGCGAC
GAGCTTGCCG AACTGCTGCG CCGGCTGCAC ATCACGGCCA TCCACGTCAC GCACGACCAG
CAGGAGGCGC TGGCCATTGC CGACCGCCTG GCGGTGATGA GCGCCGGGCG CATCGTGCAG
ATCGGCCGCG GCGAAGAGCT GTACCGCGCG CCGGCGCATC CCTTCGTTGC CGAATTCCTG
GGCCGCGTCA ACCGCCTCGC GCGCGAAGCC GACGCCATTG CGCAAGGCGT TGTCCGACTC
GGCGGAAGCA CCCTGCCTTG CCCACCCGCC TGGCGCAGCC ATGCGATGCT GCTGGTGCGG
CCCGAAGACG TCGAAGTGAG CGCGCCCCGG CCCGACTGGG GCACCGCCAC GGTCGAGCGC
CGCACCTTCC TCGGCGACCG CGTGCAGCTG CAGTTGCGCG TGCAGGACCA GCCCCTGCTG
GTGGCCGACG TGGGCCGCGA CACACCCTTC GGTCCCGGCG ATCCGGTGGG CCTGCGCATC
CAGCCCGACC GCCTGATGAC CTCGCAGGAG ACCATCGCAT GA
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| Protein sequence | MELERIPIDI ANCAKTYADG TRGLLPTHLH VEAGEVLALL GPSGCGKTTL LRLIAGLEAP
DAGSRIVFGG QDVTERPVEH RGVGMVFQSY ALFPQMTVAA NIGYGLRIRG VAPEEERRAV
GELVDLTRLG GLENKRPAEL SGGQRQRVAL ARAVAVRPRV LLLDEPLAAL DAKLKESLRD
ELAELLRRLH ITAIHVTHDQ QEALAIADRL AVMSAGRIVQ IGRGEELYRA PAHPFVAEFL
GRVNRLAREA DAIAQGVVRL GGSTLPCPPA WRSHAMLLVR PEDVEVSAPR PDWGTATVER
RTFLGDRVQL QLRVQDQPLL VADVGRDTPF GPGDPVGLRI QPDRLMTSQE TIA
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