Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1207 |
Symbol | |
ID | 7973377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1319327 |
End bp | 1320340 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644791804 |
Product | short chain dehydrogenase |
Protein accession | YP_002943124 |
Protein GI | 239814214 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCGA CCACCGCATC CCCCGCAAAA TCCACCCGGT CCGGCGCAAG CGCGCACACC GCCGCCAAGC AGCGGACCGT CCAGCGCACG CAGGACGCAA AGGACAGCGC CAAGCCCGCC GCCAAGAAGT CCAGCCAGCC CGCGCAGGCC GGGCCGCGCT CGCAGCCGGT CAATCCCCTG CCGGCGCAGC ACCTGAGCAA GCCCGGGCTC GAGGCCGAGA TGGCGCTGCG CCCGCGCTTC GAAGCGCCGG ACTACAAGGG CAGCGGCAAG CTCGAGGGCA TGGCGGCCCT GGTGACCGGC GGCGATTCCG GCATCGGGCG CGCCGTGGCG CTGCTCTATG CCCGTGAAGG CGCCGACGTC GCCATCGCCT ACCTCGACGA AGACGAGGAC GCCGAGGAAA CCCGGCGCCA CGTGGAGGCG GAAGGCGCAC GCTGCATCCT CGTCAAGGGC GACGTCTGCG ATCCGGCGTT CTGCCGCGAC GCGGTCGACC AGACGCTCGA GGCCTTCGGC AAGCTCGACA TCCTGGTGAA CAACGCGGCC TTCCAGCTGC ATGCGGCGTC CATCGAGGAC ATCACCGACG AGCGCTTCGA ACTCACGCTT CGGACCAACG TCTTCGGCTA TTTCCAGATG GCGCGCGCCG CGGTTCCGCA CCTGGGCCAG GGCGCCTCGA TCATCAATAC CGGCTCGGTC ACGGGCCTGG AGGGCAGCGC GCACCTGCTC GACTATTCGA CCACCAAGGG CGCGATCCAC GCGTTCACCA AGTCGCTGGC CAGCAACTTG CTGCCCAAGG GTATCCGCGT GAATGCGGTG GCGCCCGGGC CGGTGTGGAC GCCTTTGAAT CCCGCCGACA GCCCGTCCGG GAAGATCAAG GATTTCGGCA AGAACACCGA CCTGCAACGG CCGGCGCAGC CGGAAGAGCT CTCGCCTGCC TACGTGTTCC TGGCCGCGCC GAGCTGCGCC AGCTACATCA CCGGCATCGT GCTGCCGGTC ACGGGCAGCG TGGGCGCCGT CTGA
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Protein sequence | MKSTTASPAK STRSGASAHT AAKQRTVQRT QDAKDSAKPA AKKSSQPAQA GPRSQPVNPL PAQHLSKPGL EAEMALRPRF EAPDYKGSGK LEGMAALVTG GDSGIGRAVA LLYAREGADV AIAYLDEDED AEETRRHVEA EGARCILVKG DVCDPAFCRD AVDQTLEAFG KLDILVNNAA FQLHAASIED ITDERFELTL RTNVFGYFQM ARAAVPHLGQ GASIINTGSV TGLEGSAHLL DYSTTKGAIH AFTKSLASNL LPKGIRVNAV APGPVWTPLN PADSPSGKIK DFGKNTDLQR PAQPEELSPA YVFLAAPSCA SYITGIVLPV TGSVGAV
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