Gene Vapar_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1178 
Symbol 
ID7973347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1290648 
End bp1291037 
Gene Length390 bp 
Protein Length129 aa 
Translation table11 
GC content63% 
IMG OID644791774 
Productputative transmembrane protein 
Protein accessionYP_002943095 
Protein GI239814185 
COG category[S] Function unknown 
COG ID[COG3671] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAACG ACATCGTGAA CGTGGAACCC GACGACTCGC TCAAGACCTG GGGCTGGATC 
AGCTACATCC TGCACCTGAT CGTGGCCATT GGCGCCGTCC TGCCGGGGGC GCAGGCCTCG
GTGGCGCTGC TGCTGCTGGC GCTGCTGATC GACTTCATCA AGCGCGACGA CGCGGCAGGC
ACCTGGCAGG CCACGCATTT CAGCTGGCGC ATCCGCTCGG TGCTGTGGGC GGGCCTGCTG
TACATCCTGA CCTCGTGGCT CTGGCTGCTC TTTCTCGTGC CGGGCTGGAT CGCCTGGAGC
CTCATTTCGC TGTGGTTTCT CTACCGGATC GTGAAGGGCA TGATCCGCAT GAACGGCAGC
CGTCCCATGG AACCCAAAGA TGTCATCTGA
 
Protein sequence
MANDIVNVEP DDSLKTWGWI SYILHLIVAI GAVLPGAQAS VALLLLALLI DFIKRDDAAG 
TWQATHFSWR IRSVLWAGLL YILTSWLWLL FLVPGWIAWS LISLWFLYRI VKGMIRMNGS
RPMEPKDVI