| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1149 |
|---|
| Symbol | |
|---|
| ID | 7973318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1262568 |
|---|
| End bp | 1263143 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791745 |
|---|
| Product | protein of unknown function DUF1415 |
|---|
| Protein accession | YP_002943066 |
|---|
| Protein GI | 239814156 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3310] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCC CGGCGACAAT CGATGCCATC CAGGCCGAAG CCGACATGCG GCGCTGGCTC
GAACGCGCGG TGATCGGGCT CAACCTGTGC CCGTTCGCGA AGGCGGTGCA CGTCAAGGCG
CAGATCCGCT ATGCCGTGTA CCTGCCCACC GATGAAGCCG CGCTGATCGA CATGCTCCTG
GCCGAGGCCG ATGAACTCGC CGCGCTCGAT GCCTCCGTGC GCGACACCAC CTTGCTGATA
GCACCCAACA CCTTGGCCGA TTTCCTGGAT TTCAACGACT TCACGGCACG CGCCGAACGC
CGGCTCGTGC GTGCGGGCTT CGACGGCGTG TTCCAGCTCG CGAGCTTCCA TCCGCGCTTC
CAGTTCGCGG GCACCGACGC CGACGACTTG GGCAACGCCA CCAATCGCGC GCCGTACCCC
ACGCTGCACC TGCTGCGCGA GGACAGCGTG AGCCGCGCGG TCGAGGCCTT TCCCGAAGCC
GAAGCCATCT TCGAGCGCAA CATCGAGACG CTCGAAGCGC TGGGGCCGGA CGGCTGGGCC
GCGCTGGACG TGGGCCCGGG GAGCGCCCGG CCATGA
|
|---|
| Protein sequence | MTSPATIDAI QAEADMRRWL ERAVIGLNLC PFAKAVHVKA QIRYAVYLPT DEAALIDMLL
AEADELAALD ASVRDTTLLI APNTLADFLD FNDFTARAER RLVRAGFDGV FQLASFHPRF
QFAGTDADDL GNATNRAPYP TLHLLREDSV SRAVEAFPEA EAIFERNIET LEALGPDGWA
ALDVGPGSAR P
|
|---|
| |