Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1105 |
Symbol | |
ID | 7969627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1211467 |
End bp | 1212531 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791701 |
Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
Protein accession | YP_002943022 |
Protein GI | 239814112 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.458506 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCACCC CACCGAAGAC CCCGAACCTG ATCCCCGCCA GGCCCCGCAT CGCCGTGCTG CTCGGCGACC CCGGCGGCAT CGGCCCCGAG ATGGCCGTGA AGCTGCTCGC GCGCCAGCGC AACCTGGACG CCGCGCGCGT GCTGCTGATC GCCGACCCGG TGGTGCTGGC CGCGGGCGAG CGCGTGGCGG GCGTCAAGCT CGATCCGCTG CGGATCGACG GACTCGACGA CCTGCGCTTC GAGCACGGCC GCCCCACCCT GCTGCAGCGC GACTGGATGC AAGGCCGGGA GCCGGTGCTC GGCGAGTCGA ACGAGGCCTC GGGCCGCGCC TCCTTCGAGG CGCTGGAACT GGCCACCGCG GCCGTGCGGC GCGGCCAGGC CGAGGGCATT GTCTTCGCGC CGCTCAACAA GCATTCGCTG CGGCTCGGTG GCCTCGTGCA CGAGGACGAG TTGCGCTACA TGCAGGAGCG CTTCGCGGTG ACGGGCTTCG TCTGCGAATT CAACCTCACG GGTTCGCTCT GGACCTCGCG CGTGACCTCG CACATTCCGC TGAAGGATGT GGCGAGCCAC ATCACGGTGG AGGGCGTGGG CGATGCGGTG AAGATCATTG CATCGGCGCT GCGCCGTGCG GGCGTGGCAC AGCCGCGCAT CGCAGTGACG GGGCTCAACC CGCATGCGGG CGACGGCGGC TCGATCGGCA TGGAAGAGAT CGAGATCATC GCACCGGCCA TCGAGCGGCT GCGCGCCGAG GGCTACGACG CGCGCGGTCC GTTCTCGCCC GACACGGTGT TCATCGGCGC GCGCCGCGGC GACGTGGATG CGGTGGTGTC GATGTACCAC GACCAGGGCC AGATCGCGAT GAAGCTCATG GGCTTCGAGC AGGGCGTGAC GCTGCATGGC GGCCTGCCCG TGCCGGTAGC CACCTCGGCC AGCGGCAGCG CCTTCGACAT CGCGGGCAAG GGCGTCGCGC AGATCGAAGG CCTGCAGCAG GCCTTCGACC TGTGCGTGCG CATGGCCAGC GGTGGGCCGG TGCGCACGCT TTCCAGCGCG GAAACTGCAG CCTGA
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Protein sequence | MPTPPKTPNL IPARPRIAVL LGDPGGIGPE MAVKLLARQR NLDAARVLLI ADPVVLAAGE RVAGVKLDPL RIDGLDDLRF EHGRPTLLQR DWMQGREPVL GESNEASGRA SFEALELATA AVRRGQAEGI VFAPLNKHSL RLGGLVHEDE LRYMQERFAV TGFVCEFNLT GSLWTSRVTS HIPLKDVASH ITVEGVGDAV KIIASALRRA GVAQPRIAVT GLNPHAGDGG SIGMEEIEII APAIERLRAE GYDARGPFSP DTVFIGARRG DVDAVVSMYH DQGQIAMKLM GFEQGVTLHG GLPVPVATSA SGSAFDIAGK GVAQIEGLQQ AFDLCVRMAS GGPVRTLSSA ETAA
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