| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0992 |
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| Symbol | |
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| ID | 7971963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1090308 |
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| End bp | 1092338 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791588 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002942909 |
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| Protein GI | 239813999 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTTCC CAAGCATTTT GGCACCCATG CGGCATCGCC CGCGCAATAC AGCGTCCGCG
CTGGTTTTTT CCGCCGTCCT GGCTGCCGCC GCACTGCTTT CGCAGCAGCC CGCCGCCGCC
CAGGCCAACA GCAACGACGA CGTCCTGGTC CAGATGAAGC AGGCCTTCCA GCGCGGCGAC
AAGGGCCGGC TCGCGGCCCT GCTGCCGCAG GCGCGCGGCC ATGCGCTCGA ACCCTGGGCC
GCCTACTGGG AACTCAAGGC CCGCCTGCAG GAAGCCGCGC CGAACGAAGT GCAGGACTTC
TTCGCCCGCT ACCCCGGCAC CTACCAGGAA GACCGGCTGC GCAACGACTG GCTGCTGCTG
CTGGGCCAGC GCCGCGACTG GGACGGCTTT TCCGCCGCGC TGGCGGGCTT TCGCATGGGC
GACGATCCGC AGGTGCGCTG CTACGCGATC CTGGTCGAGG CCCTGCAATC GGGCAGCGCC
ACGCAGGCCC AGGCCAACGA GGTGCGCCGC AACTGGTTCG CGCAGAAAGA GGCGGACGAC
GGCTGCCTCA CCGCGGCCGA CCGCCTGGTC GCGGCCCGCC TGCTGTCGCC CAACGATGCC
TGGACGAAGG CGCGCCTGGC CATGGAGACC AACCGCCCGC AGGCCGCGCG CGGCGCCGTG
ACCATTGCCG CGCCCGATGC GCTGCCGCTG TTCGAGGAGC TCAACGCCAG CGCGGCCAAG
TTCCTGGCCG GCCGCGCCTT CGTGGCCGCC AAGTCGCGCA AGGAGCTGGT GGTGCTGGCG
CTCATCAAGA TCGCCATGGC CGACCCGGAG CAGGCCGCCA CCCAGCTCGA CAGCAAATGG
GGCCCGATGC TTTCGGCCGA GGAGCGCAAC TGGCTCTGGG GCACCATCGG CCGCCAGGCC
GCGAGCAAGC TCTCGCCGCT GGCCGGCAGC TACTTTGCCA ACGTCACGAA GAACGGCGAC
CTGACCGACG ACATGCTCGG CTGGCGCGTG CGCGCCGCGC TGCGCAACGG CCAATGGAAA
GAGGTGGCGC CCGCCATCAA CGCCATGAGC GAAACGGCGC AGCTGGAGCC GACCTGGGTC
TACTGGAAGG CGCGCGCACT CAGCGCGGCG GGCGGCGACG ACCGCCGCGC GCAGGCACGC
GAGCTCTACC AGAGCATTGC GGGCACGCGC GGCTTCTACG AGATGCTGGC GCTGGAGGAA
CTCGGCCAGC GCACCGTGGT GCCCACGCGC CCGGCGCCGC TCACGCCCGA AGAAAAGAAC
GCCGCGCGCA GCAACATCGC GCTCAACCGC GCGCTCTACG CCATTGCGAT CGGCCTGCGC
TCCGAGGGCA CGCGCGAATG GAACTACGCC ACCAACCTGC ACGACAAGGG CGGCATGGAC
GACCGCGCGC TGCTGGCCGC GGCCGACTTC GCCTGCCAGC GCGAGGTCTG GGACCGCTGC
ATCAACACCA GCGAGCGCAC CAAGGGCGTG ATCGATGTCG AGCAGCGCTT CCCCATGCCC
TTCCACGACA CGGTGCTGCG CAAGAGCCAG GACATCGGCC TGGACCCGGC CTACGTCTAC
GGCCTGATCC GCCAGGAAAG CCGCTTCATC ATGGACGCGC GCTCGGGCGT CGGCGCCTCG
GGCCTGATGC AGGTCATGCC CGCCACCGCG CGCTGGACCG CACGCAAGAT CGGCCTGGCC
GGCTTCACGC CCGGGCAGAT CAACGACCAT GAAACCAACA TCACCATCGG CACCAACTAC
CTGAAGCTCG CGCTCGACGA CTTCGACGGC TCCATGGCGC TGGCCGCGGC CGCCTACAAC
GCCGGCCCGG GACGGCCGCG CAGCTGGCGC AACGGCCCGG TGATGGAAGC CGCGATCTGG
GCCGAGAACG TGCCCTTCGG CGAAACGCGC GACTACGTGA AGAAGGTGCT GGCCAACACC
ACCAACTACG CCGCGCTGAT CAGCGGGCGG CCGCAGTCGC TGAAGGAGCG CCTGGGCCGC
GTGGGCCCGC GCGACGCGGC AGAACCCGAA CCCAACAAGG ATCTCCCCTG A
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| Protein sequence | MQFPSILAPM RHRPRNTASA LVFSAVLAAA ALLSQQPAAA QANSNDDVLV QMKQAFQRGD
KGRLAALLPQ ARGHALEPWA AYWELKARLQ EAAPNEVQDF FARYPGTYQE DRLRNDWLLL
LGQRRDWDGF SAALAGFRMG DDPQVRCYAI LVEALQSGSA TQAQANEVRR NWFAQKEADD
GCLTAADRLV AARLLSPNDA WTKARLAMET NRPQAARGAV TIAAPDALPL FEELNASAAK
FLAGRAFVAA KSRKELVVLA LIKIAMADPE QAATQLDSKW GPMLSAEERN WLWGTIGRQA
ASKLSPLAGS YFANVTKNGD LTDDMLGWRV RAALRNGQWK EVAPAINAMS ETAQLEPTWV
YWKARALSAA GGDDRRAQAR ELYQSIAGTR GFYEMLALEE LGQRTVVPTR PAPLTPEEKN
AARSNIALNR ALYAIAIGLR SEGTREWNYA TNLHDKGGMD DRALLAAADF ACQREVWDRC
INTSERTKGV IDVEQRFPMP FHDTVLRKSQ DIGLDPAYVY GLIRQESRFI MDARSGVGAS
GLMQVMPATA RWTARKIGLA GFTPGQINDH ETNITIGTNY LKLALDDFDG SMALAAAAYN
AGPGRPRSWR NGPVMEAAIW AENVPFGETR DYVKKVLANT TNYAALISGR PQSLKERLGR
VGPRDAAEPE PNKDLP
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