| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0976 |
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| Symbol | |
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| ID | 7971947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1075157 |
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| End bp | 1075945 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791572 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942893 |
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| Protein GI | 239813983 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.541973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAG CGCCCCTTCC TCCTGTTACG CCCGCCCGCC GCACCGTCCT CGTCACGGGT
GCCGGCCGCC GGCTGGGGCG CGAGATCGCG CTGGCGCTGG CCGCGGGCGG CTGGCAGGTG
GCGGTGCACT ACCGCAGCTC GCGCGCCGAG GCCGAGCAGA CGGCGGCCGA TTGCGCGGCC
CTCTCGGGCA CTTCGGCGCC TTTCGAGGCC GACCTGCTCG ACGAAGGCGC CACCCGCGCC
CTGCTGCCGC GCGTGGCGGC GCACTTCGGC AGCGTCGATG CCGTGGTCCA CAGCGCAGCG
CTCTTCGAAC ACGACGACGC CGCGAGCTTC AGCTACGCGC TCATGGAGCG CCATGCGCGC
AGCAACACCG GTGCGGCCAT CGTGCTGGCG CAGGCGCTGC ACGACCACCT GGCGCTGCGC
GGCGACGCGC AGGGCGCGGT GGTGCACATG CTCGACCAGA AGCTCTGGAA CCCGAACCCC
GACTTCCTGA GCTACACGCT ATCGAAGGCC GCGCTCGAGG CCGCCACGCC CATGCTGGCC
CTGGCGCTGG CGCCGCGCGT GCGGGTGGTG GGCGTGGCGC CCGGCCTCAC GCTGCCCAGC
CACATGCTCG ACGAGGACAG GTTCTCGAAG CTGCACACGC TCTCGCCGCT GGGCCGCTCT
TCGACGCCGG CCGACGTGGC GGCCACGGTG AAGTTCGCGC TGGAGAACAA CTCGATCACC
GGCACCACGC TCGTGGTGGA CGGCGGCCAG CACCTCATGA AATTCGACCG CGACTTCTCG
CTGATGTGA
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| Protein sequence | MSTAPLPPVT PARRTVLVTG AGRRLGREIA LALAAGGWQV AVHYRSSRAE AEQTAADCAA
LSGTSAPFEA DLLDEGATRA LLPRVAAHFG SVDAVVHSAA LFEHDDAASF SYALMERHAR
SNTGAAIVLA QALHDHLALR GDAQGAVVHM LDQKLWNPNP DFLSYTLSKA ALEAATPMLA
LALAPRVRVV GVAPGLTLPS HMLDEDRFSK LHTLSPLGRS STPADVAATV KFALENNSIT
GTTLVVDGGQ HLMKFDRDFS LM
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