| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0971 |
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| Symbol | |
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| ID | 7970146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1069284 |
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| End bp | 1072454 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791567 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_002942888 |
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| Protein GI | 239813978 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCT CGGAGCTGTG CATCCGTCGT CCCGCGATGA CGGTGCTGTT GTCCGCGGCG
GCGGTGGTGG CGGGCATCTT TGCCTACTTC AGCATCCCGG TGGCCGCGCT GCCGAGCTAC
AACACGCCGG TCATCAACGT GAACGCCCAG CTGCCGGGCG CGAGCCCGGA CACCATGGCT
TCGTCGGTGG CGCTGCCGCT GGAGAAGCAG TTCTCGACCA TTCCGGGCCT GCAGACCATC
AGCTCGGTCA ACACCCAGGG CGTGAGCTCG ATCACGCTGG AATTCGTGAG CAGCCGCGAC
ATCGATGCCG CCGCGGTCGA CGTGCAGGCC GCGCTGCTGC GCGCCCAGCG ACAGCTGCCG
CAGGAACTGA CGCAGCTGCC TTCGTACCGC AAGGTCAATC CGGCCGACGC GCCGGTGCTG
TTCATCGCGC TGATCTCGCC GTCGATGAAT CCGGCCGAGC TCAACGACTA CGCCGAGAAC
CTGATCTCGC CCACGCTTTC CACCATCGAC GGCGTGGCGC AGGTGGGCGT GTACGGTCGC
AAGGCCTTTG CGGTGCGCAT CAAGGCCAAT GCCGACCTGC TCAATGCGCG CAACATCACG
CTCGACGAGC TGGCCAAGGC AGTGAATTCG GCCAACGCCA ACACGCCCGT CGGCGTGCTC
GACGGGCCGC GCCAGACGCT CACCATCCAG GCCAACCGGC AGCTCACGAG GGCGGAAGAT
TTCGCCAAGC TGATCGTCGG GCAGCGCAAC GGCGCGCCGG TGCGGCTGGA CGAAGTGGCC
ACCATCGAGG ACAGCTTCGA ATCGGTCAAG ACCGCCAGCA GCTTCAACGG CCAGAGCTCC
ATCTCGCTGG CCGTGCAGCG CCAGCCCAAC GCCAACACCG TGCAGGTGGT GGATGCGGTG
CGCGCACTCA TTCCGCGCTT CAAGGCGGAG CTGCCGCAAT CGGTCGAGAT CCACATGGTG
AACGACCGCT CGCTGTCCAT CCGCGAAGCC GTGCACGACG TGCAGCTCAC GCTGCTGGGC
ACCGTCGCGC TGGTGGTGCT GGTAATCTTC CTGTTCCTGC ACCGGCTGGT GGCCACGCTG
ATTCCGGCGG CCACCATTCC CATTTCGCTG ATCGGCGCGG TGGCGCTGCT CTATGCCTTC
GGCTACAGCC TGGACAACGT CTCGCTGCTG GGCATCACGC TGGCCGTGGG GCTGGTGGTG
GACGATGCGA TCGTGGTGCT CGAGAACATC ATGCGCTACG TCGAGAAAGG CATGGAGCCG
ATGGCCGCGG CGCTGCGCGG CGCGCGCGAG GTGGGCTTCA CCATCATCTC GATCTCGATC
TCGCTGGTGG CGGTGTTCAT TCCCATCTTC TTCATGCCGG GCGTGATCGG CCTGCTGTTC
CATGAGTTCG CGGTGGTGGT GGCGCTGGCG GTGCTGGTGT CGGCCATCGT GTCGCTCACG
CTGGTGCCGA TGCTCGCGAG CCGGCTGCTC AAGCACGTGC CGCGCAAGGA TGGCGCGCTC
GACCACGAGG AAGAGCACCC CGAGCCCGGC ACCGCCGTGG GACGCGCCTT CGAGCGCGGC
TACCGCTGGG TGCATGCGAA CTACATGCGG ACGCTCGACT GGACGCTCGC GCACCGCAAG
CTGATGCTGC TGTTGGCCGG CGGCACCTTC GTCGTCACGG CCTGGCTGTT CGTCTCCATT
CCGAAGGGCT TCTTCCCCGA GGAGGACATC GGGCAGATCC AGATCACCAC CGAAGCGGCC
GAGGACATTT CCTTCACCGC CATGAACGCG CTGCAGGAAC GCGTGGCCGC TTCGCTGCAG
GCCGATCCGA GCGTGGCCTA CGTGAGCTCG TTCGTCGGCG TGGGCGGTCC CACCGCCACG
CAGAACTCCG GCCGCCTGTT CGCGGTGCTC AAGCCGCGCA GCCAGCGTCC CAAGATGGCC
GCGGTGCTCG AATCGCTGCG CCAGCGCTTC CGCGAGATCC CGGGCATCGC GGTCTACATG
CAGCCGGTGC AGAACCTGCG CCTGGGCGGC CGCCAGAGCA AGGCGCGCTT CCAGTACACG
CTGCAGAGCG TCAATGCGGG CGAGATGGTG CCCTGGGCCA CGCGGCTCAT GGAGCGCATG
CGCGCCGATC CGGCCTTCCG CGACGTCACC AGCGATTCGC AGAACCGCGG CCTGCAGGCC
ACGCTGGAGA TCGACCGCGA CAAGGCCGGC GTGCTCGGCG TGGCCGTGGG CGACCTGCGC
ACCGCGCTCT ACAACGCGTA CGGCGACCGG CAGATCGGCA GCATCTACGG CGCGAGCAAC
ACCTACCAGG TGATTCTCTC GGCCGCCGAC AACGACCGGC AGTTCGAGGA CGACGTGTCG
CGCCTGTCGG TGCGCAGCAC CAGCGGCCGG CTGGTGCCGC TGTCGGCCTT CTCGACCGTC
AAGCGCACCG TGGGGCCCAC CTCGGTCAAC CACCAGGGGC AGCTGCAGGC GGTGACGGTG
TCGTTCAACC TCGCGCCCGA CGTGCCGCTG GGCAACGCGA CCGCGAAGAT CGACCAGTTC
AAGGAAGAGC TGAAGATGCC GCAGTCGATC ATCACCACCT ACGGCGGCGA TGCCGCGGTG
TTCCAGAGCT CGCAGGCCAG CCAGGCCGTG CTGCTGGTGC TGGCCGTGCT CGTGATCTAC
GTCCTGCTGG GCGTGCTGTA CGAAAGCTAC ATCCACCCGC TGACCATCCT GGCCGGGCTG
CCGTCGGCGG CCGTGGGCGC CTTGCTCTCG CTCAAGATCT TCGGCTTCGA CCTGACGCTG
ATCGCGACCA TCGGCATCCT GCTCCTGATC GGCATCGTGA AGAAGAACGC GATCATGATG
ATCGACTTCG CCCTTGATGC GCAGCGCACC GAGGGCATGA AGCCGGTCGA TGCGATCCGC
GAGGCCTGCC GGCTGCGCTT CCGCCCGATC CTCATGACCA CGCTGGCCGC GCTGATGGGC
GCGCTGCCGC TCGCATTGGG CCTGGGCGCC GGCGCCGAGC TGCGCCAGCC GCTGGGCGTG
GCGGTGGTGG GCGGGCTGAT CTTCTCGCAG GTGATCACGC TCTACATCAC GCCCGCGATC
TACCTCGCGC TCGACCGCTA CAGCGGCACC GGGCCGATGG TCGACCTGCC GGGCGAGGCC
AAGGCCGAGG CTGGTGGCGG TGCCGCGGGG CACGCGGCCT CGCACGCCTA G
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| Protein sequence | MNISELCIRR PAMTVLLSAA AVVAGIFAYF SIPVAALPSY NTPVINVNAQ LPGASPDTMA
SSVALPLEKQ FSTIPGLQTI SSVNTQGVSS ITLEFVSSRD IDAAAVDVQA ALLRAQRQLP
QELTQLPSYR KVNPADAPVL FIALISPSMN PAELNDYAEN LISPTLSTID GVAQVGVYGR
KAFAVRIKAN ADLLNARNIT LDELAKAVNS ANANTPVGVL DGPRQTLTIQ ANRQLTRAED
FAKLIVGQRN GAPVRLDEVA TIEDSFESVK TASSFNGQSS ISLAVQRQPN ANTVQVVDAV
RALIPRFKAE LPQSVEIHMV NDRSLSIREA VHDVQLTLLG TVALVVLVIF LFLHRLVATL
IPAATIPISL IGAVALLYAF GYSLDNVSLL GITLAVGLVV DDAIVVLENI MRYVEKGMEP
MAAALRGARE VGFTIISISI SLVAVFIPIF FMPGVIGLLF HEFAVVVALA VLVSAIVSLT
LVPMLASRLL KHVPRKDGAL DHEEEHPEPG TAVGRAFERG YRWVHANYMR TLDWTLAHRK
LMLLLAGGTF VVTAWLFVSI PKGFFPEEDI GQIQITTEAA EDISFTAMNA LQERVAASLQ
ADPSVAYVSS FVGVGGPTAT QNSGRLFAVL KPRSQRPKMA AVLESLRQRF REIPGIAVYM
QPVQNLRLGG RQSKARFQYT LQSVNAGEMV PWATRLMERM RADPAFRDVT SDSQNRGLQA
TLEIDRDKAG VLGVAVGDLR TALYNAYGDR QIGSIYGASN TYQVILSAAD NDRQFEDDVS
RLSVRSTSGR LVPLSAFSTV KRTVGPTSVN HQGQLQAVTV SFNLAPDVPL GNATAKIDQF
KEELKMPQSI ITTYGGDAAV FQSSQASQAV LLVLAVLVIY VLLGVLYESY IHPLTILAGL
PSAAVGALLS LKIFGFDLTL IATIGILLLI GIVKKNAIMM IDFALDAQRT EGMKPVDAIR
EACRLRFRPI LMTTLAALMG ALPLALGLGA GAELRQPLGV AVVGGLIFSQ VITLYITPAI
YLALDRYSGT GPMVDLPGEA KAEAGGGAAG HAASHA
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