| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0833 |
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| Symbol | |
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| ID | 7972048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 917133 |
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| End bp | 918170 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791431 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_002942752 |
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| Protein GI | 239813842 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCC GCCGCACCCT GCTCGGCCTT GCCGCCGCAG CAACCGCCCT GGGCATGTTC
TCGACCGGCG CCATGGCGCA GGCCGCCTAC AAGCCCGAGT ACAAGATGTC CCTCGTGCTC
GGCCCGCCCA CCCCCTGGGG CCAGGCCGGA AAGATCTGGG CCGACCTCGT CAAGGAGCGT
ACCCAGGGCC GCATCAACAT CAAGCTGTAC CCCGGCGTGT CCCTCATCCA GGGCGACCAG
ACCCGCGAGT TCAGCGCGCT GCGCCAGGGC GTGATCGACA TGGCCGTCGG CTCGACCATC
AACTGGTCGC CGCAGGTCAA GCAGCTCAAC CTTTTTTCCA TGCCCTTCCT GATGCCCGAC
TACGCGGCCA TCGACGCGCT CACCCAGGGC GAGGTCGGCA AGGACATGTT CAAGACCCTC
GACAAGGCCG GCGTCGTGCC GCTCGCCTGG GGCGAGAACG GCTACCGCGA GATCACCAAC
TCGAAGAAGC CGATCAAGTC GCCCGCCGAC CTCAAGGGCA TGAAGATCCG CGTCGTCGGC
TCGCCGATCT ACTCCGACAT GTTCACCGCG CTCGGCGCCA ACCCCACGCA GATGAGCTGG
GCCGATGCGC AGCCCGCGCT CGCCAGCGGC GCCGTCGACG GCCAGGAGAA CCCGCTCTTC
CTGTTCACCG TGCTCAAGAT GCACACCGTG GGCCAGAAGT TCGTGACCAC CTGGGGCTAC
GTGGCCGATC CGCTGGTGTT CGTGGTCAAC AAGGAAATCT GGGCCTCGTG GACGCCGGCC
GACCAGGCCA TCGTGCGCCA GGCCGCCGTC GATGCCGGCA AGCAGGAAAT CGCGCTCGCG
CGCAAGGGCC TGGTGGAAGC CGACAAGCCG GTGCTCAAGG ACATTGCCGC CATGGGCGTC
ACCGTGACCC AGCTCACGCC CGACGAGCGC GAAGCCTTCG TGAAGGCCAC GCGGCCGGTG
TACGACAAGT GGAAGTCGAC CGTGGGCGCG GACCTCGTGG CCAAGGCCGA GAAGGCCATC
GCGGCGCGCC AGAAGTAA
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| Protein sequence | MKFRRTLLGL AAAATALGMF STGAMAQAAY KPEYKMSLVL GPPTPWGQAG KIWADLVKER
TQGRINIKLY PGVSLIQGDQ TREFSALRQG VIDMAVGSTI NWSPQVKQLN LFSMPFLMPD
YAAIDALTQG EVGKDMFKTL DKAGVVPLAW GENGYREITN SKKPIKSPAD LKGMKIRVVG
SPIYSDMFTA LGANPTQMSW ADAQPALASG AVDGQENPLF LFTVLKMHTV GQKFVTTWGY
VADPLVFVVN KEIWASWTPA DQAIVRQAAV DAGKQEIALA RKGLVEADKP VLKDIAAMGV
TVTQLTPDER EAFVKATRPV YDKWKSTVGA DLVAKAEKAI AARQK
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