| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0705 |
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| Symbol | |
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| ID | 7974668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 767982 |
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| End bp | 769088 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791304 |
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| Product | SMP-30/Gluconolaconase/LRE domain protein |
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| Protein accession | YP_002942625 |
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| Protein GI | 239813715 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3386] Gluconolactonase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAACA AAGCCCTCGA GCCTCGCCGC CGCTTCCTGA AGAATGCCGC GGGCTCCGGA
CTGGCCGCCG TCGCCGGGCT GGCCAATGCG CAGTCCTTCG ACTTCAAGCC CAACCAGCGC
TACCCGGACC CTTCGGTGCT GATCCTGGAC CCGAGCTTTG CCAAGTACCG CATCTACAGC
AGCACCGTCG AGCAGCTGGG CACCGGCATG CGCTGGGCCG AGGGGCCGGT GTACTTTCCG
GAGGGCGGCT ACCTGCTGTG CAGCGACATT CCGAACAACC GGCTCATGAA GTACGACGAG
AAGACCGGCA AGTTCACGGT GCACAAGCAG AACGCCAACT ATGCCAACGG CAACACGCGC
GACCGCCAGG GCCGCCTCGT CACCTGCGAG CATTCGGTCA CGCGCCGCGT GGTGCGCACC
GAGAAGAACG GCCGCATCAC CGTGCTGGCC GACAGCTACG AAGGCAAGAA GCTCAACGCG
CCCAACGACG TGGTCGTGAA GTCGGACGAC AGCGTGTGGT TCACCGACCC GACCTTCGGC
ATCAACGGCG AGTGGGAAGG ATCGAAGGCC ACGCCGGAGC AGGCCACCAC CAATGTCTAC
CGCATCGCGA AGGACGGCAA GCTCAGCGCC GTCATCACAG ACCTGGTGAA CCCGAACGGG
CTCGCGTTCT CGCCGGACGA GAAGAAGCTC TACGTGGTCG AGTGGAAGGG CACGCCCAAC
CGCAGCATCT GGAGCTACGA CGTTGCCGCC GATGGCGCCA GCGTGTCGAA CAAGACCAAG
CTCATCGATG CGGACGGCCC CGGCGCGCTC GACGGATTCC GTGTCGACCG CGACGGCAAC
CTCTGGTGCG GATGGGGCTT CAACGGCGCA TTCGCGCCCG AGCCCACCGA CGTGGGCGGC
GGCCTGAAGG CCCACCTGCC GCTCGGAAAA TCCGAAGAGA TGGACGGCGT GAAGGTCTTC
AACCGCGACG GCAAGCCGAT CGGCTTCATC CGCCTTCCCG AGCGCTGTGC CAACCTCGAG
TTCGGCGGGC CCAAGCGCAA CCGCCTCTAC ATGGCGAGCA GCCATTCGCT CTATGCGCTC
TACGTGGAGG CGCACGGCGC GGTGTAG
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| Protein sequence | MQNKALEPRR RFLKNAAGSG LAAVAGLANA QSFDFKPNQR YPDPSVLILD PSFAKYRIYS
STVEQLGTGM RWAEGPVYFP EGGYLLCSDI PNNRLMKYDE KTGKFTVHKQ NANYANGNTR
DRQGRLVTCE HSVTRRVVRT EKNGRITVLA DSYEGKKLNA PNDVVVKSDD SVWFTDPTFG
INGEWEGSKA TPEQATTNVY RIAKDGKLSA VITDLVNPNG LAFSPDEKKL YVVEWKGTPN
RSIWSYDVAA DGASVSNKTK LIDADGPGAL DGFRVDRDGN LWCGWGFNGA FAPEPTDVGG
GLKAHLPLGK SEEMDGVKVF NRDGKPIGFI RLPERCANLE FGGPKRNRLY MASSHSLYAL
YVEAHGAV
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