Gene Vapar_0638 details

Gene Information

• Locus tag: Vapar_0638
• ID: 7973623
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 694929
• End bp: 695531
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791245
• Product: isochorismatase hydrolase
• Protein accession: YP_002942566
• Protein GI: 239813656
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACACCCG TCGCCACTGC CGTGCTGGCG CTGCACTACC AGAACGAGGT GCTGCACCCG 
GACGGCAAGA TTCGCGTCGG CGTCGATGCG AACGACCCGC GGCGGGCGGC GGTGGTGGGC 
GCGGGGGCGC AGCTGCTCGC GGGCGCGCGC GAACGCGGCT GGCCGGTTAT GCACGTGCGC 
ATCGCCTTTC GTTCCGACTA CTCGGACTGC CCGGTCAACA CGCCGGTGTT TCGCAAAACC 
GTCGAGCTCG GTGCGGTCAA GGATGGCGAG TGGGGCGCGG ACTTTCTCGA CCGGCTGGTG 
CCGCAGGCGC GGCCCCGCGA GTTCGTGTTC ACACACACGC GCATCAGTGG CTTCGCGGGC 
ACCGCGCTTG AGCAGACGCT TCGCATGCTG GGCGTGACGC GCCTCCTGGT GGGCGGTGTG 
GCCACGCACT CGGTCGTCGA GGGCACGGTG CGCGACGCAG CCGACCGTGG CTTCGAGGTC 
TGGGTCGCGC AGGACGCCTG TTCCGCTGGC ACGCGGCAGA CGCACGAGGC CGCGTTGGCG 
AGCATGGCGC TCATCGCCAC CATCACTGAC GTGGCCAGCG GCTTCGCGGC GCTGGACGCG 
TAG 

 

Protein sequence

MTPVATAVLA LHYQNEVLHP DGKIRVGVDA NDPRRAAVVG AGAQLLAGAR ERGWPVMHVR 
IAFRSDYSDC PVNTPVFRKT VELGAVKDGE WGADFLDRLV PQARPREFVF THTRISGFAG 
TALEQTLRML GVTRLLVGGV ATHSVVEGTV RDAADRGFEV WVAQDACSAG TRQTHEAALA 
SMALIATITD VASGFAALDA