Gene Vapar_0546 details

Gene Information

• Locus tag: Vapar_0546
• ID: 7972956
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 606789
• End bp: 607328
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644791149
• Product: hypothetical protein
• Protein accession: YP_002942475
• Protein GI: 239813565

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGCA AGTGGAACGA CAACGACTAT CACCCCTATG CGGATGCGTA CTACCCGCTG 
AGCAAGCACT ATGGCGGCCC GGGGGCTGCC GGCCTGATGA AGAAGACCGG CATCAAGGGG 
CTGATCGTCC ACATCACCGA CGGCAACAGC CTGCTCAGCT CGCTCAAGAC CACCTGGGAA 
AACCGCGCGG CCTCGGCCCA CTTCGCGGTG GACAAGGGCG GCACGATCGC GCAGTACATT 
CCGCTGTCGC AGCGCTCCTG GGCCGTCGAC GGCTGGAAGG TGGACAACCT CTGGTACAGC 
GTGGAGAACG TCGCGGTGCA CGGCGAGACG CTCACCGACA TGCAGATCCG CATGAACGGC 
TATCTGCTCG CGTGGCTCAA CGGGGAATAC GGCGTGCCGC TGAAGCTCGC GGCCACGCCG 
GACGACAGCG GCCTGTCGTA CCACGCGATG TTCACCAAGT CGAAGCCCTG CCCCGGCAAG 
CCGGTCATCG CGCAGCTGCA GGACATCGTG GACGCTGCCG TGGGATTGAA CGGCGGCTAG 

 

Protein sequence

MSSKWNDNDY HPYADAYYPL SKHYGGPGAA GLMKKTGIKG LIVHITDGNS LLSSLKTTWE 
NRAASAHFAV DKGGTIAQYI PLSQRSWAVD GWKVDNLWYS VENVAVHGET LTDMQIRMNG 
YLLAWLNGEY GVPLKLAATP DDSGLSYHAM FTKSKPCPGK PVIAQLQDIV DAAVGLNGG