| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0545 |
|---|
| Symbol | |
|---|
| ID | 7972955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 605923 |
|---|
| End bp | 606762 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791148 |
|---|
| Product | protein serine/threonine phosphatase |
|---|
| Protein accession | YP_002942474 |
|---|
| Protein GI | 239813564 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0631] Serine/threonine protein phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAATCG AAATCGTCAC GCTGTCCCGG CAGGGCGGCC GCAACTACAA CGAAGACGTC
CACGGCCACT GGCACGACGA GCGCTACGTC GCCTGCCTGG TGGCCGACGG CGCCGGCGGC
CATGGCGGCG GCGATGTGGC GGCGGCAACC ACGCGCAGCA GCGTGCTGGG CGGCTTCTCG
GCGGCGCCGG GGCTGGACGA GTTCACCTTG CGCACGCTGG TCGAGCAGGC CAACCGCGAC
GTGGTGGCGC GGCAGTCCGA AGGCGGCAAG CTTGCCGGCA TGCGCTCCAC GGTGGTCTTC
GCGGCCATCG ACCTGGAGAG CCAGGCGCTG GCCTGGGTGC ACAGCGGCGA CAGCCGCGCC
TACCTGTTCC GCGGCGGCGC CATCGTGGCG CGCACCACCG ACCACAGCCT GGTGCAGCAG
ATGGTGGCCG GCGGCATGCT CGACGAGGAA GGCGCGCGCC TGCATCCGCA GCGCAACATG
CTGCTCTCGG CGCTCGGCTC GATCGAGGAA GCGCCCGACA TCACGGTGTC CGACCGCATG
CGCCTGATGC CCGGCGACGT GCTGCTCCTG TGCAGCGACG GCGTGTGGGA GCCGCTGGGC
GACGAGTGCC TGGTCGACAC GCTGCACGCC TCGCGCACGC CCAGCCAGTG GACCGAGCAG
CTCGACGCGC AGATCAAGGC GCACGCCAAG CCGGGGTACG ACAACTACAC GGCGCTCACG
CTGTGGGTGA TTCCCGATGA CGTCGACGAC GCCACGCGCC TGATGCCGGC GGCCGAGGAA
GAGACGATGC CGGCGTCGAT CGAGGAACCT TCGGCGGCGC CCGGCAAACT GCCGGATTGA
|
|---|
| Protein sequence | MEIEIVTLSR QGGRNYNEDV HGHWHDERYV ACLVADGAGG HGGGDVAAAT TRSSVLGGFS
AAPGLDEFTL RTLVEQANRD VVARQSEGGK LAGMRSTVVF AAIDLESQAL AWVHSGDSRA
YLFRGGAIVA RTTDHSLVQQ MVAGGMLDEE GARLHPQRNM LLSALGSIEE APDITVSDRM
RLMPGDVLLL CSDGVWEPLG DECLVDTLHA SRTPSQWTEQ LDAQIKAHAK PGYDNYTALT
LWVIPDDVDD ATRLMPAAEE ETMPASIEEP SAAPGKLPD
|
|---|
| |