| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0497 |
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| Symbol | |
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| ID | 7972907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 537437 |
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| End bp | 538462 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791100 |
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| Product | Ku protein |
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| Protein accession | YP_002942426 |
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| Protein GI | 239813516 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1273] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02772] Ku protein, prokaryotic |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTCT CGAAAAAAGC CCCCGCGCCG CGCGTCCTGT GGAAGGGCGC GATCAGCTTC
GGCCTCGTCC ACATCCCGGT GGCGCTGTAC TCGGCCACCA CCGACCACGC CATCGACTTC
GACTGGCTCG ACAAGCGCAC GATGGACCCG GTCGGCTACA AGCGCATCAA CAAGAAGACC
GGCAAGGAGA TCGCGCGCGA GAACATCGTC AAGGGCATCG AGTACGAAGA CGGCGAATAC
GTGGTGCTGA GCGACAAGGA GATTGCCGAC GCCTATCCCA AGACCACGCA GACCATCGAG
ATCGAGAGCT TCGTGCCCGC CAACGGCATT CCCTTCGTCT ACCTCGAGCG GCCCTACTAC
GTGGCGCCCA TCAACCGCGG CACCAAGGTG TACGCGCTGC TGCGCGAGAC GCTGCAGCGC
ACCCAGCGCA TCGGCGTGGC GCGCGTGGTG ATCCAGACCA AGCAGCACCT GGCCGCGCTC
GTGCCGGTGG GCCCGGGGCT GGTGCTGAAC CTGCTGCGCT GGGGCGCCGA CATCCGGCCC
TGGACCGAAC TGCCGCTGCC GTCGGAAGAC GCGAAGAAGG CGGGGCTGCG CGAGCACGAG
ATCAAGATGG CCGAGCAGCT GGTCGAGGAC ATGAGCGCCG AGTGGGACCC GGACGACTAC
AAGGACGAGT TCAAGGACGA GATCCTGCGC CTGGTCGACC GCAAGGTGGC CGCGGGCCAG
ACCGAGACCG TGACGCAGAT CGAGCCCGAG GAAGGCCAGG CGCTGGAGAG CCGCGGCGCG
AAGATCATCG ACCTCACCGA GCTGCTGCAG CGCAGCCTGC GCAAGGGCGG TGGCGGCGGC
AAGGCGGCCG CGGCCGGCGA AGACAGCGGC GATGAAGAAG AAGAGGCGCC CGCGGCAACC
AAACCGAGGT CCAAGGCCAA GCCCCGGGCC CCAGGCAAGG CCGCCGCAAA AAGCAGCAGC
AGCAGCAGCG CCGCGCGCAA GCGCAGCGCG GCCAAGAGCG CCACCGCCCG GCGCCGCGCG
GCATGA
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| Protein sequence | MAVSKKAPAP RVLWKGAISF GLVHIPVALY SATTDHAIDF DWLDKRTMDP VGYKRINKKT
GKEIARENIV KGIEYEDGEY VVLSDKEIAD AYPKTTQTIE IESFVPANGI PFVYLERPYY
VAPINRGTKV YALLRETLQR TQRIGVARVV IQTKQHLAAL VPVGPGLVLN LLRWGADIRP
WTELPLPSED AKKAGLREHE IKMAEQLVED MSAEWDPDDY KDEFKDEILR LVDRKVAAGQ
TETVTQIEPE EGQALESRGA KIIDLTELLQ RSLRKGGGGG KAAAAGEDSG DEEEEAPAAT
KPRSKAKPRA PGKAAAKSSS SSSAARKRSA AKSATARRRA A
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