Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0497 |
Symbol | |
ID | 7972907 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 537437 |
End bp | 538462 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644791100 |
Product | Ku protein |
Protein accession | YP_002942426 |
Protein GI | 239813516 |
COG category | [S] Function unknown |
COG ID | [COG1273] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02772] Ku protein, prokaryotic |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGTCT CGAAAAAAGC CCCCGCGCCG CGCGTCCTGT GGAAGGGCGC GATCAGCTTC GGCCTCGTCC ACATCCCGGT GGCGCTGTAC TCGGCCACCA CCGACCACGC CATCGACTTC GACTGGCTCG ACAAGCGCAC GATGGACCCG GTCGGCTACA AGCGCATCAA CAAGAAGACC GGCAAGGAGA TCGCGCGCGA GAACATCGTC AAGGGCATCG AGTACGAAGA CGGCGAATAC GTGGTGCTGA GCGACAAGGA GATTGCCGAC GCCTATCCCA AGACCACGCA GACCATCGAG ATCGAGAGCT TCGTGCCCGC CAACGGCATT CCCTTCGTCT ACCTCGAGCG GCCCTACTAC GTGGCGCCCA TCAACCGCGG CACCAAGGTG TACGCGCTGC TGCGCGAGAC GCTGCAGCGC ACCCAGCGCA TCGGCGTGGC GCGCGTGGTG ATCCAGACCA AGCAGCACCT GGCCGCGCTC GTGCCGGTGG GCCCGGGGCT GGTGCTGAAC CTGCTGCGCT GGGGCGCCGA CATCCGGCCC TGGACCGAAC TGCCGCTGCC GTCGGAAGAC GCGAAGAAGG CGGGGCTGCG CGAGCACGAG ATCAAGATGG CCGAGCAGCT GGTCGAGGAC ATGAGCGCCG AGTGGGACCC GGACGACTAC AAGGACGAGT TCAAGGACGA GATCCTGCGC CTGGTCGACC GCAAGGTGGC CGCGGGCCAG ACCGAGACCG TGACGCAGAT CGAGCCCGAG GAAGGCCAGG CGCTGGAGAG CCGCGGCGCG AAGATCATCG ACCTCACCGA GCTGCTGCAG CGCAGCCTGC GCAAGGGCGG TGGCGGCGGC AAGGCGGCCG CGGCCGGCGA AGACAGCGGC GATGAAGAAG AAGAGGCGCC CGCGGCAACC AAACCGAGGT CCAAGGCCAA GCCCCGGGCC CCAGGCAAGG CCGCCGCAAA AAGCAGCAGC AGCAGCAGCG CCGCGCGCAA GCGCAGCGCG GCCAAGAGCG CCACCGCCCG GCGCCGCGCG GCATGA
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Protein sequence | MAVSKKAPAP RVLWKGAISF GLVHIPVALY SATTDHAIDF DWLDKRTMDP VGYKRINKKT GKEIARENIV KGIEYEDGEY VVLSDKEIAD AYPKTTQTIE IESFVPANGI PFVYLERPYY VAPINRGTKV YALLRETLQR TQRIGVARVV IQTKQHLAAL VPVGPGLVLN LLRWGADIRP WTELPLPSED AKKAGLREHE IKMAEQLVED MSAEWDPDDY KDEFKDEILR LVDRKVAAGQ TETVTQIEPE EGQALESRGA KIIDLTELLQ RSLRKGGGGG KAAAAGEDSG DEEEEAPAAT KPRSKAKPRA PGKAAAKSSS SSSAARKRSA AKSATARRRA A
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