Gene Vapar_0474 details

Gene Information

• Locus tag: Vapar_0474
• ID: 7970215
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 517305
• End bp: 517736
• Gene Length: 432 bp
• Protein Length: 143 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644791077
• Product: protein of unknown function DUF132
• Protein accession: YP_002942403
• Protein GI: 239813493
• COG category: [R] General function prediction only
• COG ID: [COG1569] Predicted nucleic acid-binding protein, contains PIN domain
• TIGRFAM ID: [TIGR00305] probable toxin-antitoxin system toxin component, PIN family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCGTTC CAGAATCCGG CCTCGTCGTC ATCGACACCA ACATCGCGCT CGACCTGCTG 
GTCTTCGAAG ACCCCGCCTG GGTGCCGCTG ATCGCTATGC TGGCCGCGGG CGAACTGCGC 
TGGCTCGCGA CGGCCGCGAT GCGCGTCGAA CTCGAACGCG TGCTCGGCTA TCCGCTGATC 
GCCCGCCGCA TGGCGCAGCG CGGCCTGCAA GTACCCGCGG TGCTGGCGGA CTTCGATGCC 
CGGGTGCGCA TGGTCGAAGG CGTTCCATCG CGCGCGCCCT GCGTCTGCAG CGACCCCGAC 
GACCAGGTCT TCATCGACCT TGCGGTGGCG CACCGCGCGC TGCTGCTCAG CAAGGACCGC 
GCGGTGCTGT CGATGAAGAA GCGGCTGGCC CTGCGCGGCG TGGTGGTGCA GGCGGCGCTC 
GGGATTTCGT AG 

 

Protein sequence

MLVPESGLVV IDTNIALDLL VFEDPAWVPL IAMLAAGELR WLATAAMRVE LERVLGYPLI 
ARRMAQRGLQ VPAVLADFDA RVRMVEGVPS RAPCVCSDPD DQVFIDLAVA HRALLLSKDR 
AVLSMKKRLA LRGVVVQAAL GIS