Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0466 |
Symbol | |
ID | 7970207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 508288 |
End bp | 509880 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644791069 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_002942395 |
Protein GI | 239813485 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.292828 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCAAG GGCTGTCCCT TCGCGTTTCG CAGCACCTGG CGCTCACGCC CCAACTGCAG CAGTCGATCC GGCTGCTGCA GCTGTCCACG CTCGAACTGA GCCAGGAAGT GGAGCAGATG CTGGACGAGA ACCCGTTCCT CGAACGCACC GCGGAAGAAG CCGCGCGCGA GGAATTCGGG CTCGACGCCA TCGACACGCC GGTGCCGCGC GACGAGGCCG GTGAAGCCGC CGAGGGCGAA TTCAGCTCGG CCCCGGCCAG CAGCACGACC AGCACTTCGA GCGAAACCGC CTCCACGGCC GAGTCCGAGG TTCCCGCCGC CGACGCCACC GAGCGCGAGC CCGACTGGGA AGGCGACGGC ACCGTCGACA TGGCGCCCGA CGACAGCGAA TGGGGCAGCG ATGCCCCCGC GCGCCAGAAC AACCTGGGCG ACGACGAGCG CGCCGACGCC ACCGAGCTCG CGCGCAGCCA GGAGTCGCTG CAGTCCTTCC TGCACCGGCA GGCGCTGAGC CTGCGGCTCA ACGAGAACGA CAGCGCCGCG CTGCGCTTCC TGATCGAATC GCTCAACGAC GACGGCTACC TGGAGGATTC GCTGCCGGCG CTGGCCTCGG GCCTCGCGGG CGACGACAAC GACCAGTTCG ACGAGCTGGT GCACCACTTC CAGGTGGCGC TCGGCCTGCT GCAGAGCCTG GAGCCGGCCG GCGTCGGCGC GCGCGACCTG GGCGAATGCC TTTGCATCCA GCTGCGCGCG CTCGCCAGCG AAAGCGAGAC CGAGGAACAG GCGCTGGTGC GCAAGACCGC CATCGCGATC TGCAAGCAGC CGATGGAGCT GCTCGCGCGG CGCGACTTCA AGCGCCTGGC CACGCTCACG CGCACCAACG AAGAGCTGGT GCGCTCGGCG CTGCAGGTCA TCTCGCGCCT GGAGCCCAAG CCGGGCCGCC GTTTTGTCGA TGTCGAGCGC AACATCGTGA TTCCCGACGT GATCGTCACC AAGATCGGCC GCGGCACCAA TGCCAAGTTC CGCGTCATGC TCAATCCCGA GGTGATGCCG CGGCTGCGCG TGCACGACAT CTATGCCGGC GCGCTCAAGT CGCACAAGGG CGAGGGCAGC CAGGCGCTGT CGCAGCGGCT GCAGGAGGCG CGCTGGTTCA TCAAGAACAT CCAGCAGCGC TTCGACACCA TCCTGCGCGT GAGCAACGCC ATCGTCGAGC GGCAGAAGAG CTTCTTCGTG CACGGCGAGC TCGCGATGCG GCCCCTGGTG CTGCGCGAGA TTGCCGACGA ACTGGGCCTG CACGAATCGA CCATCTCGCG CGTGACCACG GCCAAGTACA TGTCCACGCC TTTCGGCACG GTCGAGCTCA AGTACTTCTT CGGCTCGGCG CTCGGTACCG AGACCGGCGG CAATGCGTCG AGCACCGCGG TGCGCGCGCT GATCAAGCAG TTCGTGAGCT CCGAGAGCAT CAAGAAGCCG CTGTCCGACA GCCAGATCTC CGAGATGCTC AAGGAGCAGG GCATCGAGTG CGCGCGCCGC ACCGTGGCCA AGTACCGCGA GGCCCTGCGC ATCGCGCCGG CCAACCTCCG CAAGGCGCTG TAG
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Protein sequence | MKQGLSLRVS QHLALTPQLQ QSIRLLQLST LELSQEVEQM LDENPFLERT AEEAAREEFG LDAIDTPVPR DEAGEAAEGE FSSAPASSTT STSSETASTA ESEVPAADAT EREPDWEGDG TVDMAPDDSE WGSDAPARQN NLGDDERADA TELARSQESL QSFLHRQALS LRLNENDSAA LRFLIESLND DGYLEDSLPA LASGLAGDDN DQFDELVHHF QVALGLLQSL EPAGVGARDL GECLCIQLRA LASESETEEQ ALVRKTAIAI CKQPMELLAR RDFKRLATLT RTNEELVRSA LQVISRLEPK PGRRFVDVER NIVIPDVIVT KIGRGTNAKF RVMLNPEVMP RLRVHDIYAG ALKSHKGEGS QALSQRLQEA RWFIKNIQQR FDTILRVSNA IVERQKSFFV HGELAMRPLV LREIADELGL HESTISRVTT AKYMSTPFGT VELKYFFGSA LGTETGGNAS STAVRALIKQ FVSSESIKKP LSDSQISEML KEQGIECARR TVAKYREALR IAPANLRKAL
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