| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0415 |
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| Symbol | |
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| ID | 7970156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 450146 |
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| End bp | 452317 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791018 |
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| Product | 1,4-alpha-glucan branching enzyme |
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| Protein accession | YP_002942344 |
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| Protein GI | 239813434 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTCCC TGCTGCTGCC CGAACGCGAA GTGCACGCGC TGATGCGCGC CGAGCACGGC
GATCCGTTCG CGGTGCTCGG TCCGCACGAG ACGCGCGACG GCCTGCTGGT GCGCGCGCTG
CTGCCGGGCG CGCAGAGCGT GGCCGTGGTG CACACGCGCA CGGGCTGGCC GCTGGCGCTG
CTGTCGCGGC AGGAAGGCTC CGATCTTTTT GCCGGACTGG TGCCCGCGGC CGAGGCGCTG
CTGGGCTATT CGTTCCAGGT CGACTGGGGC ACGCACAGCT CGCGGCTCGA AGACCCGTAC
CGCTTTGCGT TCGTGCTGGG TGCCACCGAC GTATGGCTGC TGGCCGAGGG CACGCACCTG
CGACCCTGGG AGCGGCTGGG CGCACACCTG TGCGAGATGG ATGGCGTCAA GGGCGTGGCC
TTCGCGGTCT GGGCGCCCAA TGCGCGGCGC GTCTCGGTGG TCGGCGACTT CAACAACTGG
GACGGCCGGC GCCACATGAT GCGGCTGCGC CGCGAATGCG GCGTGTGGGA AATCTTCGCG
CCGCAGCTGG CCACGGGCGA CAGCTACGAA TTCGAGATCC TCTCGGCCCA GGGCGAGGTG
CTGCGCAAGG CCGATCCCTT CGCCTTCTCC TCGCGCCTGC GGCCCGAGAC CGCCTGCGTG
GTCGCGCCGC TGCCCGCGCC CGTCGCCATG CCGCCCGAAC GCGCCGCCGC CAACGGCCGC
CATGCGCCGA TGAGCATCTA CGAGGTGCAC CTGGGCTCCT GGCGCCGCAA GAACGGCCAT
GAATGGCTGG ACTACCGCGA GCTGGCCGAC ACACTGGTGC CGTACGCGCG CGACATGGGC
TTCACGCACA TCGAGCTGCT GCCGGTCAGC GAGCATCCGT TCGACGGCTC CTGGGGCTAC
CAGCCGATCG GCCTGTATGC GCCCACCTCG CGCTTCGGCA CGCCCGGCGA CTTCCGCCAT
CTGGTCGAAG CCGCGCATGC CGCGGGCCTG GGCGTGATCC TCGACTGGGT GCCCGCGCAC
TTCCCCACCG ACGCGCACGG CCTGGGCCGC TTCGACGGCA CCGCGCTCTA TGAATACGCC
GATCCGCGCG AGGGCTTCCA CAACGACTGG AAGACCTTCA TCTTCAACTA CGGCCGCACC
GAGGTGCGCA ACTACCTGGT CGGCAATGCG CTGTACTGGC TCGAGCGCTA CGGCGTCGAC
GGACTGCGCG TCGACGCCGT GGCCTCCATG CTCTACCGCG ACTACAGCCG CCAGCCCGGC
GAATGGGTGC CCAACATCCA CGGCGGGCGC GAGAATCTCG AGGCCATCGA CTTCCTGCGG
CGCATGAACC GGGTGGTGGG CGTCGAGCGC CCGGGCGCCA TCACGCTGGC CGAGGAGTCC
ACGAGCTTTC CGGGCGTGAC GCGGCCGCCC GAGGACGGCG GCCTGGGCTT CCACTACAAA
TGGAACATGG GCTGGATGAA CGACACGCTC GCCTATGCGG GCATCGACCC GGTCCACCGC
AAGCACCACC ACCAGAAGAT CACCTTCGGC CTGATGTATG CGCACAGCGA GAACTTCGTG
CTGCCGCTCT CGCACGACGA GGTGGTGCAC GGCAAGGGCT CGATGTTCGG CCGCATGCCC
GGCGACGAGT GGCAGAAGTT CGCGGGGCTG CGCAATCTTT ATGGCTACCT CTGGGCCTAT
CCGGGCAAGA AGCTGCTGTT CATGGGCAAT GAATTCGCCC AGGTGGCGGA ATGGAACGCC
GACCGCAGCC TCGACTGGCA CCTGCTCGAG CAGGCGCCGC ACCAGGGCAT GCGGCGGCTG
GTGCGCGACC TCAACAACGT GTACCGGCAC TTCCCCGCGC TGCACGAGCT CGACACCGAA
AGGGCCGGCT TCGAGTGGCT GGTGCATGAC GACCGGGAGC AGTCGGTCTT CGCCTTCGTG
CGCCGGGCCC AGGGCGGCTC CTTCGTGGTG GCGGTGTGCA ACTTCACGCC GCTGCCGCGC
CACGGCTACC GGCTTGGCGT GCCCGCGGCG GGCGCCTACC GCGAGGCCAT CAACACCGAC
GGCGCCGTGT ACGGCGGCAG CGGTGTCGGC AACGGCGTGG TCGACAGCGA ACCGGTGCCC
TGGCACGGCC GGGCCGATTC GATTCTCATC AGCGTGCCGC CCCTGGCCAC CGTGATGTGG
GTGCTGGCCT GA
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| Protein sequence | MPSLLLPERE VHALMRAEHG DPFAVLGPHE TRDGLLVRAL LPGAQSVAVV HTRTGWPLAL
LSRQEGSDLF AGLVPAAEAL LGYSFQVDWG THSSRLEDPY RFAFVLGATD VWLLAEGTHL
RPWERLGAHL CEMDGVKGVA FAVWAPNARR VSVVGDFNNW DGRRHMMRLR RECGVWEIFA
PQLATGDSYE FEILSAQGEV LRKADPFAFS SRLRPETACV VAPLPAPVAM PPERAAANGR
HAPMSIYEVH LGSWRRKNGH EWLDYRELAD TLVPYARDMG FTHIELLPVS EHPFDGSWGY
QPIGLYAPTS RFGTPGDFRH LVEAAHAAGL GVILDWVPAH FPTDAHGLGR FDGTALYEYA
DPREGFHNDW KTFIFNYGRT EVRNYLVGNA LYWLERYGVD GLRVDAVASM LYRDYSRQPG
EWVPNIHGGR ENLEAIDFLR RMNRVVGVER PGAITLAEES TSFPGVTRPP EDGGLGFHYK
WNMGWMNDTL AYAGIDPVHR KHHHQKITFG LMYAHSENFV LPLSHDEVVH GKGSMFGRMP
GDEWQKFAGL RNLYGYLWAY PGKKLLFMGN EFAQVAEWNA DRSLDWHLLE QAPHQGMRRL
VRDLNNVYRH FPALHELDTE RAGFEWLVHD DREQSVFAFV RRAQGGSFVV AVCNFTPLPR
HGYRLGVPAA GAYREAINTD GAVYGGSGVG NGVVDSEPVP WHGRADSILI SVPPLATVMW
VLA
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