| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0411 |
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| Symbol | |
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| ID | 7970152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 442615 |
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| End bp | 445098 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791014 |
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| Product | glycogen/starch/alpha-glucan phosphorylase |
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| Protein accession | YP_002942340 |
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| Protein GI | 239813430 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0058] Glucan phosphorylase |
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| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.908979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTCA AAGACTTCGC CTACGACCAT CCCGACCGCG ACGTGGCCGC GTTCAAGCGC
GCCGTCGCCA ACAAGCTGAT CTATGCGGTC GGCAAGGACC CCGTCGCAGC CAGCCAGGAC
GACTGGCTGC ACGCCACCGC GCTGGCCGTG CGCGACCAGC TGGTCGAGCG CTGGATGGCG
ACCACGCGCG CCAACTATGC GCAGGACCTC AAGCGCGTCT ACTACCTCTC GATGGAGTTC
CTGATCGGGC GCACCTTCAC CAATGCGCTG CTGGCGGTCG ACCTCTACGA CACGGTGCGC
GAAGCCCTGG CCGACTTCGG CGTCGACATG GCGGCGCTGG CCGAGCGCGA GCCCGACGCG
GCGCTGGGCA ACGGCGGCCT CGGCCGGCTC GCGGCCTGCT TTCTCGACTC GATGGCCACG
CTCGGCGTGC CGGGCATGGG CTACGGCATC CGCTACGAAT ACGGCATGTT CCGCCAGCGC
ATCGTCGACG GCCAGCAGGT CGAGACGCCC GACTACTGGC TCACGCGCGG CAACCCCTGG
GAGTTCCAGC GGCCCGAGGT GAACTACCGC GTGCGCTTCG GCGGCCGCGT GCAGAAGCGC
GAGGGCACCA ACGCGCCCTA CGGCGCGGCC GACTGGGTCG ACACGCACGA CGTGCTGGCC
GTGGCCTACG ACACCATCAT CCCGGGCTAC GGCACGCAGG CCACCAACAC GCTGCGCCTG
TGGTCGGCGC GCGCCACCGA GGAGATCGAT CTCTCGGCCT TCAACCGCGG CAACTACATG
GCGGCGGTGG AGAGCAAGAA CCACTCCGAG AACGTCTCGC GCGTGCTCTA CCCCGACGAC
TCCACGCCTT CGGGCCGCGA GCTGCGGCTG CACCAGGAAT ATTTCTTCTG CAGCGCGAGC
GTGCAGGACC TGCTGCGGCG CTACCTGCGC AACCACAAGA GCTTCGACCA GCTGGCCGAC
AAGGTCAGCA TCCACCTGAA CGACACGCAC CCGGTGCTCG CGGTGCCCGA GCTCATGCGC
CTTCTGCTCG ACGAGCACGG CCTGGCATGG GACACGGCCT GGGCCCACAC GCAGAAGGTG
TTCAGCTACA CCAACCACAC GCTGATGCAC GAGGCGCTGG AGACCTGGCC GGTCGAGATG
CTCGGGCGCA TCCTGCCGCG GCACCTGCAG ATCATCTACG ACATGAACGC GAAGTTCCTC
GCGGCCGTGA CGCAGAAGGC CGGCAACGAC GTCGAGCTGC TGCGCCGGCT CTCGCTGGTG
GACGAAGCGG GCGAGCGCCG CGTGCGCATG GCCTACGTGG CGGTGCTCGC GAGCCATTCG
ATCAACGGCG TGTCGGGCCT GCATTCGGAG CTCATGAAGC AATCGATCTT CGCGGACTTC
GCAAGGATCT TCCCCGAGCG CTTCAACAAC AAGACCAACG GCGTCACGCC GCGGCGCTGG
CTCGCGCAGG CCAACCCGCC GCTCGCGAGC CTGCTCGACC AGCGCCTGGG CAAGGGCTGG
CGGCGCGACC TCTCGCAGCT CGAGGCGCTG CGGCCGATGG CGGCCCAGCC GCCCTTCGCA
CGGGCCTTCC GCCATGCCAA GCGCGAGAAC AAGCTGCGCC TGGCCAATTG GGTCGAGCAG
CACATGGGCC TGGTGCTCGA CACCGACGCG ATGTTCGACG TACAGGTCAA GCGCATCCAC
GAATACAAGC GGCAGCTGCT CAACGTGCTG CACGTGGTCA CGCGCTACCA CCGCATCCTC
GATGCGCAGG CCGCGGGCGC GCCGGTCGAC ATCGTGCCGC GCGTGGTGGT GTTCGCGGGC
AAGGCGGCCT CGGCCTACCA GATGGCCAAG CTCGTGATCC GGCTGGTCAA CGACGTGGCC
CACACCATCA ACAACGACAG CCGCGTCGGC AAGCTGCTGA AGGTGGTGTT CCTGCCCAAC
TACAGCGTGA GCCTGGCCGA GGTGATCATG CCCGCGGCCG ATTTGTCGGA GCAGATCTCC
ACCGCGGGCA CCGAGGCCTC GGGCACCGGC AACATGAAGT TCGCGCTCAA CGGCGCGCTC
ACCATCGGCA CGCTCGACGG CGCCAACGTG GAGATGCGCG ACAACGTGGG CGCGGAGAAC
ATCTTCATCT TCGGCAACAC CACGCCAGAG GTGGCCGACA TCCGCGCCCA CGGCTACCAG
CCGCGCGACA TCTACGAAGA GAACGCCGAG CTCAAGCGCG TGCTCGATGC GATCCGCGAC
GGCGCCTTCT CGGCCGGCGA GCCCTCGCGC TACCAGGGCA TCTACGACGC GCTCGTGAAC
TGGGGCGACC ACTACCTGCT GCTGGCCGAC TACGCGAGCT ACGTCGCGAA GCAGGCCGAG
GTCGATGCGC TGTACCGCGA CCCGGACGCC TGGACGCACA TGGCCATCCT CAACGTGGCG
GGCATGGGCG CGTTCTCGTC CGACCGCACG ATTGCGCAGT ACGCGCACGA GATCTGGCAC
ACCAAGCCCG TGGTGCTGGG CTGA
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| Protein sequence | MTLKDFAYDH PDRDVAAFKR AVANKLIYAV GKDPVAASQD DWLHATALAV RDQLVERWMA
TTRANYAQDL KRVYYLSMEF LIGRTFTNAL LAVDLYDTVR EALADFGVDM AALAEREPDA
ALGNGGLGRL AACFLDSMAT LGVPGMGYGI RYEYGMFRQR IVDGQQVETP DYWLTRGNPW
EFQRPEVNYR VRFGGRVQKR EGTNAPYGAA DWVDTHDVLA VAYDTIIPGY GTQATNTLRL
WSARATEEID LSAFNRGNYM AAVESKNHSE NVSRVLYPDD STPSGRELRL HQEYFFCSAS
VQDLLRRYLR NHKSFDQLAD KVSIHLNDTH PVLAVPELMR LLLDEHGLAW DTAWAHTQKV
FSYTNHTLMH EALETWPVEM LGRILPRHLQ IIYDMNAKFL AAVTQKAGND VELLRRLSLV
DEAGERRVRM AYVAVLASHS INGVSGLHSE LMKQSIFADF ARIFPERFNN KTNGVTPRRW
LAQANPPLAS LLDQRLGKGW RRDLSQLEAL RPMAAQPPFA RAFRHAKREN KLRLANWVEQ
HMGLVLDTDA MFDVQVKRIH EYKRQLLNVL HVVTRYHRIL DAQAAGAPVD IVPRVVVFAG
KAASAYQMAK LVIRLVNDVA HTINNDSRVG KLLKVVFLPN YSVSLAEVIM PAADLSEQIS
TAGTEASGTG NMKFALNGAL TIGTLDGANV EMRDNVGAEN IFIFGNTTPE VADIRAHGYQ
PRDIYEENAE LKRVLDAIRD GAFSAGEPSR YQGIYDALVN WGDHYLLLAD YASYVAKQAE
VDALYRDPDA WTHMAILNVA GMGAFSSDRT IAQYAHEIWH TKPVVLG
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