Gene Vapar_0404 details

Gene Information

• Locus tag: Vapar_0404
• ID: 7973548
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 437730
• End bp: 438197
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644791007
• Product: putative PTS IIA-like nitrogen-regulatory protein PtsN
• Protein accession: YP_002942333
• Protein GI: 239813423
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCGCC TCGCGTCCAT CCTGCCGCCC GCTCAAGTGC TTGTGAGCGT TGACGCTACC 
AGCAAGAAAC GTGCTTTCGA AGAAGCCGGC TTGCTGTTCG AGAGCCTTCA CGGCCTCGGC 
CGCGCGCTCA TCACCGACAG CCTGTTCGCA CGCGAACGCC TCGGCTCCAC CGGGCTCGGG 
CACGGGGTGG CCATTCCGCA CGGCCGCATC AAGGGCCTCA AGGCCCCCAT GGCCGCGGTC 
TTCCAGCTGG CCAACCCGAT CGGCTTCGAC GCGCCGGACG AGCAGCCCGT CGGGCTCCTG 
ATCTTCCTGC TGGTGCCCGA GGCGGCCACC CAGAAGCACC TTGAAATCCT CTCCGAGATC 
GCCGAGCTGC TGAGCGACGC CAACCTGCGC GAGCAGATCA AGTCGAGCAC CGACGCGGCC 
GAACTGCACG GACTCATTGC CGGCTGGCAG TCGACGCAAG TCGCCTGA 

 

Protein sequence

MNRLASILPP AQVLVSVDAT SKKRAFEEAG LLFESLHGLG RALITDSLFA RERLGSTGLG 
HGVAIPHGRI KGLKAPMAAV FQLANPIGFD APDEQPVGLL IFLLVPEAAT QKHLEILSEI 
AELLSDANLR EQIKSSTDAA ELHGLIAGWQ STQVA