| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0297 |
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| Symbol | |
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| ID | 7972646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 317554 |
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| End bp | 318525 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644790900 |
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| Product | Mammalian cell entry related domain protein |
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| Protein accession | YP_002942226 |
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| Protein GI | 239813316 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1463] ABC-type transport system involved in resistance to organic solvents, periplasmic component |
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| TIGRFAM ID | [TIGR00996] virulence factor Mce family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.525082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAACA AAGCCCATGC CATCGCCGCC GGCGCCTTCG TGCTCGGCCT CATCGCCGTG
CTCGTGGGGC TGGTGGTCTG GTTCACGCGC GACAGCACCG TGCGCAACAC CTATGAACTC
TCCACGCGCG ACCCGGTCAG CGGGCTGCAG CCGCAGGCCA TGGTGCGCTA CCGCGGCATC
GCGGTCGGCA AGGTGACCTC GATCGACTTC GACCCCAAGA CCAAGGGCAA CGTGCGCGTG
CGCATCACGG TCGACCAGCG CGTGCCGCTC ACCACCTCGA GCTTTGCCAC GCTGAGCTAC
CAGGGCGTGA CTGGCCTGGC CTTCATCGCG CTGGACGACA AGGGCGAATC GAACGTGGCG
CTCGCGCCCA ACAACGAGGA TCCGCCGCGC ATTCCGCTCA AGCCCTCGAT GCTGGCGCAG
CTGCAGGACC GCGGCGAAGC CATCGTCAAC CAAGTCGACG AGGCGACCAA GCGCGCCAAC
CAGCTGCTGA GCGACGACAA CCAGAAGCGC GCGGCCGATG CGCTGGAGAA CATCGCGGCC
GCCTCGGCCA GCGCCAACAC GCTGCTCAAG CAGCTCGACA ACACGGTGAA GACCGGGCTG
AACCCGGCGC TGGCGGCGCT GCCGAACACG CTGTCTTCGG TGAAGACCGC CGCCGGCGAC
GTCTCGCGCG TGGCCAACAA CTTCAACACC ACCGTGGGCC GGCTCAACGC GCCCGATGGT
CCGATCGAGC GGCTGAGCGA GGGCACCAAG GCGCTCGCGC AATCGGTCGA TTCGTTCAAC
GCCGCCACGC TGCCGCGCGT GAACCGCGTG GCCGACGACA CCTCGCGCGC GGTGCGCCGG
CTGGGACGTG CGGCCGACAG CATCAACGAC AACCCGCAGT CACTGCTGTT CGGCAACGGC
GGCACCGCTG CCGGGCCCGG CGAGCCCGGT TTTTCGGCGC CGCCCTCCAC CCATTCGCTG
GCACGTCCCT GA
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| Protein sequence | MENKAHAIAA GAFVLGLIAV LVGLVVWFTR DSTVRNTYEL STRDPVSGLQ PQAMVRYRGI
AVGKVTSIDF DPKTKGNVRV RITVDQRVPL TTSSFATLSY QGVTGLAFIA LDDKGESNVA
LAPNNEDPPR IPLKPSMLAQ LQDRGEAIVN QVDEATKRAN QLLSDDNQKR AADALENIAA
ASASANTLLK QLDNTVKTGL NPALAALPNT LSSVKTAAGD VSRVANNFNT TVGRLNAPDG
PIERLSEGTK ALAQSVDSFN AATLPRVNRV ADDTSRAVRR LGRAADSIND NPQSLLFGNG
GTAAGPGEPG FSAPPSTHSL ARP
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