| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0272 |
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| Symbol | |
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| ID | 7972621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 292916 |
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| End bp | 293839 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790875 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002942201 |
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| Protein GI | 239813291 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1079] Uncharacterized ABC-type transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0838291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGG ACCAGTGGAT CGCGCTCGCG GCCGGCATCG TCGGCGGTGC GCTGCGCGTG
GGCGCGCCGT TTCTTTTCGT GAGCCTGGGC GAATGCCTCA CCGAGAAGTC GGGCCGCATC
AACCTCGGGC TCGAAGGCGT GCTGGTGCTT TCGGCGATGG CGGCCTTCGG CGGTGCATAC
CTCACCGATT CGGCCTGGCT GGGGGTGCTG ATCGGCGCGC TGGCCGGGGC GGCGCTCGCG
CTGCTGCATG GCCTCTTGTG CTCGCTCGAC CGCGTGAACG ACGTGGCGAC CGGCATTGCA
TTGATGCTGC TCGGCACGGG GCTCGCGTTC TACCTGGGCA AGCCGCTGAT CCAGCCGCAG
GCGCCGCAGA TTCCCGCGAT ACCGCTGGGC TTCTGGAGCG ACAACACGGT GGTGCGCTCG
GCGCTGCAGC TCAATGCGCT GGTGCCGATC GGCGTGGCGC TCGCGGTGCT GCTCTGGTGG
GGCTTTGCGC GCACGCGGGC CGGCCTCCTG GTGCGCATGG CCGGCGACTC GGCGCAGGCG
GCGCGCGCGC TCGGCTACTC GGTCTCGGGC CTGCGCATTG CGGCGACCAC GGCCGGCGGC
TTCATCGCCG GGCTCGGCGG CGCGTCGCTC ACGCTGTTCT ATCCGGGCAG CTGGAACGAA
GGCATCTCGA GCGGCCAGGG CCTGATCGCG GTGGCGCTCG TGATCTTCGC GCGCTGGAGT
CCGCTGCGCT GCGTGGGCGC GGCGCTGCTC TTCGGCGGGG CCGGTGCCAT CGGGCCGGCG
CTGCAATCCA TCGGCATCGG CTGGGGCTAC CACCTGTTCA ACACCGTGCC TTACGTGCTC
ACGCTGGTGA TCCTGGTGTT CACCTGCAGG CCCGGCACGG CCGCCGCCGG TGCGCCGGGC
GAACTTTCAT CGACAAGGAG CTGA
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| Protein sequence | MSADQWIALA AGIVGGALRV GAPFLFVSLG ECLTEKSGRI NLGLEGVLVL SAMAAFGGAY
LTDSAWLGVL IGALAGAALA LLHGLLCSLD RVNDVATGIA LMLLGTGLAF YLGKPLIQPQ
APQIPAIPLG FWSDNTVVRS ALQLNALVPI GVALAVLLWW GFARTRAGLL VRMAGDSAQA
ARALGYSVSG LRIAATTAGG FIAGLGGASL TLFYPGSWNE GISSGQGLIA VALVIFARWS
PLRCVGAALL FGGAGAIGPA LQSIGIGWGY HLFNTVPYVL TLVILVFTCR PGTAAAGAPG
ELSSTRS
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