| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0271 |
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| Symbol | |
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| ID | 7972620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 291858 |
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| End bp | 292919 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644790874 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002942200 |
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| Protein GI | 239813290 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0872978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCAAG CGCTCAAGGA ATTCGCCCTG CCGGTGTTCG CCATCGCGGC GGCGCTGCTG
CTGTTCGGCG TGCTCGCGGC CTTTGCGGGC GTCGATCCGC TGGAGGTCTG GGCGACGCTC
TTCAAGGGCG CGTTCGGCGA CTGGTTCTCC TGGCAGAACA CATTGCAGCG CGCCGCGCCG
CTGATGCTCA CCGCGCTGTG CGTGGCATTG CCGGCGCGCG CGGGCCTCAT CGTCATCGGC
GGCGAAGGTG CGCTGGTGCT GGGCGGGCTG GCGTGCGCGG CGCTCGCGCA TGCGGTGCCG
CTGCCCGGCA ATGTCCTGGG CACGGCGATC GTCTGCATCG CGGGTGCGCT TGCCGGTGCG
CTGTGGATCG TGCTCGCAGG CTGGCTGCGC CAGTACCGCG GCATCAACGA AACCATCAGC
AGCCTGCTGC TGGCCTACAT CGCCATCGGC ATCTTCAAGC ACCTCGTCGA AGGGCCGCTG
CGCGATCCGG CGAGCCTCAA CAAGCCATCG ACCCATGCGC TGGCCGACGG GCTGCTGATC
GGCGGCATCG GCGGCTCGGA CGTGCACTGG GGCCTGGTGA TCGGCGTGGT CGCCTGCCTG
GCGCTCGGGT GGTGGCTGCG TGCCACCGCC TCGGGCTTTT CGGTGCGCGT GGTGGGCGGC
AATCCGCGCA CCGCGCAGCT CGTGGGCCTG CCGGCCACGC GGCTCATCCT GGGGGCCTGC
GCGCTCGGCG GCGCCTCTGC GGGGCTCGCG GGCGCGGTCG AGGTGGCGGC GGTGCACACC
AATGCCAATG CCTCGCTGAT CGCGGGCTAC GGCTATGCCG GCATTCTGGT GTCGTTCATC
GCGCGGCACA ACCCGGTGGC CATCGTGCCG GTGGCGATCC TGTTCGGCGG CTTCGGCGCG
GCCGGCAGCC TGCTGCAGCG GCGGCTCGGG CTGCCCGATG CCTCGGTGCT GGTGCTGCAG
GGCATGGCCT TCGTGCTGAT CCTGGCGAGC GAGGGCTTGC GCATGGTCGA CTGGAACGCC
TTTCGCGCGC GTGTGCCGCG CGGTGGGGGG GCGCTGCGAT GA
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| Protein sequence | MRQALKEFAL PVFAIAAALL LFGVLAAFAG VDPLEVWATL FKGAFGDWFS WQNTLQRAAP
LMLTALCVAL PARAGLIVIG GEGALVLGGL ACAALAHAVP LPGNVLGTAI VCIAGALAGA
LWIVLAGWLR QYRGINETIS SLLLAYIAIG IFKHLVEGPL RDPASLNKPS THALADGLLI
GGIGGSDVHW GLVIGVVACL ALGWWLRATA SGFSVRVVGG NPRTAQLVGL PATRLILGAC
ALGGASAGLA GAVEVAAVHT NANASLIAGY GYAGILVSFI ARHNPVAIVP VAILFGGFGA
AGSLLQRRLG LPDASVLVLQ GMAFVLILAS EGLRMVDWNA FRARVPRGGG ALR
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