| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0171 |
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| Symbol | |
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| ID | 7971380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 173020 |
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| End bp | 175770 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644790774 |
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| Product | methionine synthase |
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| Protein accession | YP_002942100 |
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| Protein GI | 239813190 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAG AAGTTTCCAC GCCCCGCGTC CCCCCGATGA AGCTGTCCGG CCTCGAGCCG
GTGGCCATCG ATGCCGGGTC GCTGTTCGTC AACATCGGCG AGCGCACCAA CGTCACCGGC
TCCAAGGCCT TCGCGCGGAT GATCCTGAAC GGCCAGTTCG AGGACGCCCT GGCCGTGGCG
CGCCAGCAGG TGGAGAACGG CGCGCAGGTG ATCGACATCA ACATGGACGA GGCCATGCTC
GACAGCAAGG CCGCCATGGT GCGCTTCCTG AACCTGATTG CCAGCGAGCC CGACATCGCG
CGCGTGCCGG TGATGGTCGA CAGTTCCAAG TGGGAGGTGA TCGAGGCCGG CCTGCGCTGC
ATCCAGGGCA AGGGCATCGT CAACTCCATC TCCATGAAGG AGGGCGTCGA CAAGTTCAAG
CACGAGGCCA AGCTCGTGAG GCGCTATGGC GCCGCCGCGG TGGTGATGGC CTTCGACGAA
AAAGGCCAGG CCGACACCTA CCAGCGCAAG ATCGAGATCT GCGAGCGCGC CTACCGCATC
CTGGTGGACG AGGTGGGCTT TCCGCCCGAG GACATCATCT TCGACCCCAA CATCTTCGCG
ATTGCCACCG GCATCGAGGA GCATGACAAC TACGCGGTCG ACTTCATCAA TGCCGTGCGC
TGGATCAAAG AGAACCTGCC GGGCGCCAAG GTGTCGGGCG GCGTGAGCAA CGTGAGCTTC
AGCTTCCGCG GCAACGACCC GGTGCGCGAA GCGATCCACA CCGTGTTCCT GTACCACGCG
ATCCAGGCGG GCATGGACAT GGGCATCGTC AACGCCGGCA TGGTGGGCGT GTACGACGAC
CTGGAGCCCA CGCTGCGCGA GCGCGTGGAG GACGTGGTGC TCAACCGCCG CCCCGACGCG
GGCGAACGGC TCGTCGAAGT GGCCGAGACC GCCAAGAGCG GCGCCAAGGA CGACAGCAAG
AAGCTCGAAT GGCGCGGCAC GCCGGAGCAC CCGGTGCACG TCAACCAGCG CCTGTCGCAC
GCGATGGTGC ACGGCATCAC CGACTTCATC GTCGAGGACA CGGAGGAGGC CTACCAGCAG
ATCCTCGCCA AGGGCGGCCG GCCGCTGCAC GTGATCGAGG GGCCGCTGAT GGACGGCATG
AACATCGTGG GCGACCTGTT CGGCCAGGGC AAGATGTTCC TGCCGCAGGT GGTGAAGTCG
GCGCGCGTGA TGAAGTCGGC GGTGGCCCAC CTCATTCCCT ACATCGAGGA AGAAAAGCGC
CAGGACGAGG CCGCGGGCCG CGACGTGCGC ACCAAGGGCA AGATCATCAT CGCCACCGTG
AAGGGCGACG TGCACGACAT CGGCAAGAAC ATCGTCACCG TCGTGCTCCA GTGCAACAAC
TTCGAAGTGG TGAACATGGG CGTGATGGTC CCGTGCCACG AGATCCTTGC CAAGGCGAAG
GTCGAGGGCG CGGACATCGT GGGCCTCTCC GGCCTGATCA CGCCGAGCCT CGAAGAAATG
CAGTACGTGG CCGGCGAGAT GCAGAAGGAC GACCACTTCC GCATCCGGAA GATTCCGCTT
CTGATCGGCG GCGCCACCAC CAGCCGCGTG CACACGGCCG TGAAGATCGC GCCGCACTAC
GAAGGCCCGG TGGTCTACGT GCCCGACGCC TCCCGCAGCG TGAGCGTGGC GCAGAGCCTG
CTGAGCGACC AGGCCACCGC GTACATCGAC GAGATCAACG CCGACTACGA GAAGGTGCGC
ACGCAGCATG CCAACAAGAA GCAGGTGCCG CTGTGGCCGC TGGCCAAGGC GCGCGCCAAC
AAGACGCCGG TCGATTGGTC CGGCTACACG CCGCCGGTGC CCAAGTTCAT TGGCCGGCGC
CTGTTCAAGA ACTTCGACCT GACCGAGCTC GCGAAGTACA TCGACTGGGG CCCGTTCTTC
CAGACCTGGG ATCTCGCGGG CCCGTTCCCG GCCATCCTGA AGGACGAAGT GGTCGGCACC
GAGGCCGTGC GCGTGTATGC CGATGGGCAG CGCATGCTCA AGCGCCTGAT CGAGGGCCGC
TGGCTCAGCG CGAGCGGCGT GGTCGGCTTC TGGCCCGCCA ACACGGTGAA CGACGACGAC
ATCGAGCTCT ACACCGACGA GACGCGCAGC GAAGTCGCGC TCACCTGGTA CGGCATGCGC
CAGCAGACCG AGAAGCAGGT GATCGACGGC GTGATGCGCC CGAGCCGCTG CCTGGCCGAC
TTCGTCGCGC CCAAGGACAG CGGGCTCGCA GACTACGTGG GCGTGTTCGC AGTGACGGCG
GGCCTGGGCG TCGAGAAGAA GGAGAAGTAC TTCATCGACG ACCTCGACGA CTACTCCGCC
ATCATGCTCA AGGCGCTGGC CGACCGGCTG GCCGAGGCCT TTGCCGAATC GCTGCACCAC
CGCGCGCGCA CCGACCTCTG GGGCTATGCG CCCGAAGAGG GCCTCAGCAA CGAGGACATG
ATCGCCGAGA AATACCGCGG CATCCGCCCC GCGCCCGGCT ACCCGGCCTG CCCCGACCAC
AGCGTGAAGC GCCCGATGTT CGACCTTCTG GGTTGCGCGG ACATTGGCAT GACGCTGACC
GAAAGCCTCG CTATGATGCC CGCCGCCAGC GTGAGCGGCT TCTACCTGAG CCATCCCGAG
TCGACCTACT TCAACGTCGG CAAGATCGGG CACGACCAGT TGCAGGACCA GGCGGCGCGG
CGCCGGACCA GCGAATCCGA ACTCGAGCGC CTGCTGGCGC CGAACCTTTG A
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| Protein sequence | MSEEVSTPRV PPMKLSGLEP VAIDAGSLFV NIGERTNVTG SKAFARMILN GQFEDALAVA
RQQVENGAQV IDINMDEAML DSKAAMVRFL NLIASEPDIA RVPVMVDSSK WEVIEAGLRC
IQGKGIVNSI SMKEGVDKFK HEAKLVRRYG AAAVVMAFDE KGQADTYQRK IEICERAYRI
LVDEVGFPPE DIIFDPNIFA IATGIEEHDN YAVDFINAVR WIKENLPGAK VSGGVSNVSF
SFRGNDPVRE AIHTVFLYHA IQAGMDMGIV NAGMVGVYDD LEPTLRERVE DVVLNRRPDA
GERLVEVAET AKSGAKDDSK KLEWRGTPEH PVHVNQRLSH AMVHGITDFI VEDTEEAYQQ
ILAKGGRPLH VIEGPLMDGM NIVGDLFGQG KMFLPQVVKS ARVMKSAVAH LIPYIEEEKR
QDEAAGRDVR TKGKIIIATV KGDVHDIGKN IVTVVLQCNN FEVVNMGVMV PCHEILAKAK
VEGADIVGLS GLITPSLEEM QYVAGEMQKD DHFRIRKIPL LIGGATTSRV HTAVKIAPHY
EGPVVYVPDA SRSVSVAQSL LSDQATAYID EINADYEKVR TQHANKKQVP LWPLAKARAN
KTPVDWSGYT PPVPKFIGRR LFKNFDLTEL AKYIDWGPFF QTWDLAGPFP AILKDEVVGT
EAVRVYADGQ RMLKRLIEGR WLSASGVVGF WPANTVNDDD IELYTDETRS EVALTWYGMR
QQTEKQVIDG VMRPSRCLAD FVAPKDSGLA DYVGVFAVTA GLGVEKKEKY FIDDLDDYSA
IMLKALADRL AEAFAESLHH RARTDLWGYA PEEGLSNEDM IAEKYRGIRP APGYPACPDH
SVKRPMFDLL GCADIGMTLT ESLAMMPAAS VSGFYLSHPE STYFNVGKIG HDQLQDQAAR
RRTSESELER LLAPNL
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