| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0093 |
|---|
| Symbol | |
|---|
| ID | 7971628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 91961 |
|---|
| End bp | 93637 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644790695 |
|---|
| Product | benzoyl-CoA-dihydrodiol lyase |
|---|
| Protein accession | YP_002942022 |
|---|
| Protein GI | 239813112 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
|---|
| TIGRFAM ID | [TIGR03222] benzoyl-CoA-dihydrodiol lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.918758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGA CCACGACCCT TCAGGCGCCT CTGCGCGTCG ACTACCGCAT CGAACCCGCG
CAATACAGGC ACTGGAAGCT CAGCTTCGAA GGCCCGGTGG CGCGCCTGGT GCTCGACATC
GCGGAAGACG GCGGCATCCG CCCCGGCTAC AAGCTCAAGC TCAACAGCTA CGACCTGGGC
GTGGACATCG AACTGAACGA CGCGCTCAAC CGCGTGCGCT TCGAGCACCC TGAAGTGCGC
AGCGTGATCG TCACCAGCGG CAAGGACCGC ATCTTCTGCT CGGGCGCCAA CATCTTCATG
CTGGGCGTGT CGAGCCATGC CTGGAAGGTG AACTTCTGCA AGTTCACCAA CGAGACGCGC
AACGGCATCG AGGATTCGTC GAAGCATTCG GGCCTGAAGT TCATCGCGGC CGTGAACGGC
GCCTGCGCCG GCGGCGGCTA CGAGCTGGCG CTGGCCTGCG ACGAGATCCT GCTGGTGGAC
GACCGCTCTT CCTCGGTCTC GCTGCCCGAG GTGCCGCTGC TCGGCGTGCT GCCCGGCACC
GGCGGCCTGA CCCGCGTGAC CGACAAGCGC CATGTGCGCC ATGACCTCGC CGACATCTTC
TGCACCAGCG TCGAAGGCGT GCGCGGCCAG CGCGCGGTCG ACTGGCGCCT GGTCGATGCC
GTGGCCAAGC CCGCGCAGTT TGCCGCCGCC GTGCAGGAGC GTGCCGCGCA GCTGGCCGCC
GCGAGCGACC GCCCGGCCAG CGGCAAGGGC GTGGCGCTGA CCCGGCTCGA GCGCACCGAC
AGCGCCGACG GCATCGCCTA TTCGAACGTC GACGTGAAGA TCGACCGCAG CAAGCGCACC
GCCACGATCA CCGTCAAGGC ACCCACCGGC ACGCAGCCGG CCGACATTGC CGCCATCGAG
GCTGCGGGCG CCGCCTGGTG GCCGCTGGCC GTGTGCCGCG AGCTCGACGA CGCCATCCTC
AACCTGCGCA CCAACGAGCT CGACATCGGC ACCTGGCTGC TCAAGACCGA AGGCGACGCG
GCCGCCGTGC TCGCATCGGA CGCCCTGATG CTGGCCCACA AGGACCACTG GCTGGTGCGC
GAGACCATCG GCGCGCTGCG CCGCACGCTG GCGCGGCTGG ACGTGTCGTC GCGCAGCCTG
TTCGCGCTGG TCGAAGCCGG CTCGTGCTTT GCCGGCACGC TGGCCGAGCT GGCCTTTGCG
GCCGACCGCA GCTACATGCT CGCGCTGCCC GACGATGCCG CGCGCGCACC GAAGCTCGTG
CTCAACGAAT TCAACTTCGG CTTCTTCCCG ATGGTGAACG ACCAGAGCCG CCTGCAGCGC
CGCTTCTACG AAGAGGCCGC GCCGCTGGAC GCCGCCCGCG CCGCGGCCGG CAAGCCGCTC
GATGCCGACG AAGCACTGAA GCTCGGCCTC GTCACCGCCG CGCCCGACGA CATCGACTGG
GACGACGAGA TCCGCATCGC CGTCGAGGAG CGCGCCGCCA TGTCGCCCGA TGCGCTCACC
GGCCTCGAAG CCAACCTGCG CTTCGCCAGC AAAGAGAACA TGGCCACCCG CATCTTCGGC
CGGCTCACCG CCTGGCAGAA CTGGATCTTC AACCGCCCCA ACGCCGTCGG CGAAAAGGGC
GCGCTCAAGG TCTACGGCAC CGGCCAGAAA GCCGGCTTCG ACTTGAACCG CGTCTGA
|
|---|
| Protein sequence | MTETTTLQAP LRVDYRIEPA QYRHWKLSFE GPVARLVLDI AEDGGIRPGY KLKLNSYDLG
VDIELNDALN RVRFEHPEVR SVIVTSGKDR IFCSGANIFM LGVSSHAWKV NFCKFTNETR
NGIEDSSKHS GLKFIAAVNG ACAGGGYELA LACDEILLVD DRSSSVSLPE VPLLGVLPGT
GGLTRVTDKR HVRHDLADIF CTSVEGVRGQ RAVDWRLVDA VAKPAQFAAA VQERAAQLAA
ASDRPASGKG VALTRLERTD SADGIAYSNV DVKIDRSKRT ATITVKAPTG TQPADIAAIE
AAGAAWWPLA VCRELDDAIL NLRTNELDIG TWLLKTEGDA AAVLASDALM LAHKDHWLVR
ETIGALRRTL ARLDVSSRSL FALVEAGSCF AGTLAELAFA ADRSYMLALP DDAARAPKLV
LNEFNFGFFP MVNDQSRLQR RFYEEAAPLD AARAAAGKPL DADEALKLGL VTAAPDDIDW
DDEIRIAVEE RAAMSPDALT GLEANLRFAS KENMATRIFG RLTAWQNWIF NRPNAVGEKG
ALKVYGTGQK AGFDLNRV
|
|---|
| |