| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0090 |
|---|
| Symbol | |
|---|
| ID | 7971625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 88660 |
|---|
| End bp | 90210 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644790692 |
|---|
| Product | aldehyde dehydrogenase |
|---|
| Protein accession | YP_002942019 |
|---|
| Protein GI | 239813109 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02278] phenylacetic acid degradation protein paaN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC TCCTCCCCAA CTACGTCGCC GGCCGCTGGC AAGGCGGATC GGGCGCCGGC
ACGCCGCTCT TCGACCCGGT GCTGGGCACC GAGCTCGTGC GCGTCGACGC CACCGGCCTG
GACCTGCCCG CCGCCTTTGC CTTTGCGCGC GATGAGGGCG GCCACGCGCT GCGCGCCCTC
ACCTATCGCC AGCGTGCCGG GCTGCTCGGC GCCATCGTGA AGGTGCTGCA GGCGAACCGC
GATGCCTACT ACGAGATCGC CACCGCGAAC TCCGGCACGG TGAAGAACGA CTCGGCCGTC
GACATCGACG GCGCGATCTT CACGCTGGGC CAGTACGCGA AGTGGGGCGA TGCGCTCGGC
GACGTGCGCG CGCTGCGCGA TGGCGAGGCC GTGAAGCTCG GCAAGGAACC GGTGTTCCAG
TCGCAGCACC TGCAGCTGCC GACGCACGGC GTGGCGCTGT TCATCAACGC CTTCAACTTC
CCGTCATGGG GGCTGTGGGA AAAGGCCGCG CCGGCGCTGC TCTCGGGCGT GCCGGTGATC
GTGAAGCCCG CCACGGCCAC CGCCTGGCTC ACGCAGCGCA TGGTCAAGGA CGTGGTCGAT
GCGGGCGTGC TGCCCGCGGG CGCGCTCTCG GTCGTCTGCG GCAGCTCGGC GGGCCTGATG
GATGCGCTGC AGCCCTTCGA CGTGGTCTCG TTCACCGGCT CGGCCGAAAC CGCGGCGGTG
ATCCGCTCGC ACCCGGCCGT GGCCCAGCGC TCGGTGCGCG TGAACATCGA GGCCGACAGC
CTCAACAGCG CCCTGCTGCT GCCCGGCGCC GCGGCCGGCA GCGAGGCCTT CAACCTGCTG
GTGCGCGAAG TGGTGCGCGA GATGACGGTC AAGGCTGGCC AGAAATGCAC CGCGATACGC
CGCATCCTGG TGCCGGCCGA GCTCTACGAC GCCGCGGCCC AGGCCATCGG CGCGAAGCTC
AAAGGTGTGA CGGTGGGCAA TCCGCGCAAC GAGAGCGTGC GCATGGGTTC GCTCGTGAGC
CGGGCGCAGA TGAACGCAGT GAGCGAGGGC CTGGAAGCGC TCTCTGCGCA GGCCACCGTG
CTGTATGACG GCCGCAACAC GCCGCTGATC GATGCCGAAC CGTCGGTGGC CGCCTGCATC
GGCCCCGTGC TGCTGGGTGC GCGCGACGCC GATGCGGCGC AGCGCGTGCA CGACGTGGAA
GTGTTCGGGC CCGTCGCCAC GCTGCTGCCC TACCGCGACT TGGCGCACGG CATCGCGCTG
GCGCATCGCG GCCAGGGTTC GCTCGTGACT TCGCTCTACG GCAGCGACGA CGCCGCGCTG
GCGCAGGCCG CGCTCGCGGT GGCGCCGAGC CACGGCCGCG TGCACGTGAT CACGCCCGAG
GTGGCGCAAG CCCACACCGG CCACGGCAAC GTGATGCCGA TGTCGCTGCA CGGCGGCCCG
GGCCGCGCGG GCGGCGGCGC CGAGCTCGGC GGCCTGCGCG CGCTGGACTT CTACCATCGC
CGCAGCGCCG TGCAGGCGAG CCCCGGCGTG CTGGCCGCAC TGGGCCTCTA G
|
|---|
| Protein sequence | MTELLPNYVA GRWQGGSGAG TPLFDPVLGT ELVRVDATGL DLPAAFAFAR DEGGHALRAL
TYRQRAGLLG AIVKVLQANR DAYYEIATAN SGTVKNDSAV DIDGAIFTLG QYAKWGDALG
DVRALRDGEA VKLGKEPVFQ SQHLQLPTHG VALFINAFNF PSWGLWEKAA PALLSGVPVI
VKPATATAWL TQRMVKDVVD AGVLPAGALS VVCGSSAGLM DALQPFDVVS FTGSAETAAV
IRSHPAVAQR SVRVNIEADS LNSALLLPGA AAGSEAFNLL VREVVREMTV KAGQKCTAIR
RILVPAELYD AAAQAIGAKL KGVTVGNPRN ESVRMGSLVS RAQMNAVSEG LEALSAQATV
LYDGRNTPLI DAEPSVAACI GPVLLGARDA DAAQRVHDVE VFGPVATLLP YRDLAHGIAL
AHRGQGSLVT SLYGSDDAAL AQAALAVAPS HGRVHVITPE VAQAHTGHGN VMPMSLHGGP
GRAGGGAELG GLRALDFYHR RSAVQASPGV LAALGL
|
|---|
| |