| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0915 |
|---|
| Symbol | |
|---|
| ID | 6962243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | + |
|---|
| Start bp | 1001920 |
|---|
| End bp | 1002855 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643382180 |
|---|
| Product | HTH-type transcriptional regulator, LysR-family |
|---|
| Protein accession | YP_002265211 |
|---|
| Protein GI | 209809672 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGT TTTCTGATAT GACGATGTTT GTGAGTATAG TGAAGCATCA AGGATTAGCC
GCTGCAGGGC GTGAACTTGG TTTTTCTCCG GCCACAATGA CAGCAAGGCT TCAAGCTCTT
GAAGAAAGGT ATGGTGTAAA GCTACTTAAT AGAAGCACGA GGCATTTATC ACTCACTGAT
TCAGGAGAGC TTTACCATAA AGCCTGTATC GAGATATTGG ATAACGTTAA TGAAACAGAA
AATCTAATCC GAAACGGGGT TAAAGAAGTC AAAGGCTCAT TAAGAATATC AGCGCCAAAG
GACATCGGTA GACAATATAT CCTTCCTATA TTATCTGAGT TCTGTAAACA ACACCCCAAC
GTTGTTCCCT ATTTATATTT GAACGATCGT ATCTCTAATA TCGCTGAATC AGGTATCGAT
ATCGTGATCC GATATGGAGA GTTGGCCGAT AGCAGTTTAA TATCACGACG TTTATCACCA
AGTAAGAGAG TATTGTGTGC TTCACCAGAA TATTTAGCAC AACATGGCAC GCCATTAACA
CCTCAAGATT TGGTGAATCA TGACTGCCTA GCAATGATTC GCAGCAATGA AGAATTGAAA
ACATGGCATT TTCAAGATGA AGACCAAAAA AGTGTCATCA CTATTATTCC CAAGCGATTC
TCAGATGATG GCGAAGTCAT TAGGCATTGG GCTTTGGAAG GCGTTGGCGT TGCTTTAAAA
TCAGCTTTAG ACGTGCAAGC AGACATTGAG AATAAACGAT TAGTCACCTT ACTCAATGGA
CACATGAAAA ACTTTAATTC ATCAACATCA AGCGCAGATT TACATGTGCT ATACATCAGT
AAAAAATATC AACCAAAGCG CATCCGACTG TTTCTGGATT TTCTTCATGA ACGATTCAAT
GAATTAATAG AACAACCAGA AAGAAGTAAG AAGTAA
|
|---|
| Protein sequence | MDKFSDMTMF VSIVKHQGLA AAGRELGFSP ATMTARLQAL EERYGVKLLN RSTRHLSLTD
SGELYHKACI EILDNVNETE NLIRNGVKEV KGSLRISAPK DIGRQYILPI LSEFCKQHPN
VVPYLYLNDR ISNIAESGID IVIRYGELAD SSLISRRLSP SKRVLCASPE YLAQHGTPLT
PQDLVNHDCL AMIRSNEELK TWHFQDEDQK SVITIIPKRF SDDGEVIRHW ALEGVGVALK
SALDVQADIE NKRLVTLLNG HMKNFNSSTS SADLHVLYIS KKYQPKRIRL FLDFLHERFN
ELIEQPERSK K
|
|---|
| |