| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0659 |
|---|
| Symbol | |
|---|
| ID | 6962046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 709368 |
|---|
| End bp | 710291 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643381938 |
|---|
| Product | outer membrane protein, OmpA family |
|---|
| Protein accession | YP_002264976 |
|---|
| Protein GI | 209809438 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGA TGACGATGAA ATCATTACTG CTAGGGTTTG GTTTTTTTTC TCTCTTTGGG
TGCAGTACAG ATACTTATGT AAGTAAAGAA AACATAGACA AATACGACGA AAGAGTTCAA
AAGTTTTTGA TTGCAGAATG CTTAGTCCCT CAACGAGAAA TACAAATGGC AGTGGCGGAA
CACTTTGAAT TTGATAAGTC AGAACTAAAA GAAACAGATT ATGCCTCTTT AAATCAGTTT
GTTAATAGTA TTAAACGATT TAAAGGTCGA ATTGCTATTG TTGGTCATAC GGATTATCAA
GGTTCGGTTA GCTACAATGA AGAGTTGTCT CGTCAACGTG CAGAATCGAT TAAAGCGTAT
TTGTCAGAGA AACTCGTTGT AAGTAATTAT GAGTGGGAAG TCAAATATTA TGGAGAAAAA
CGCCCTTTTA TTAAAGGACG AAGTTTAGAA GCAAATGCTG CCAACAGACG TGCTTATTTA
GTTTTTGAAC AAACTATTGA TAAAGAGTTG AACCCGGCTT GTTTGCCTCC AGAACCTAAA
AGAAAAGTAT ATGTAACAAT GGCATCTCAT TTTGCTTTTG ATAAAGATGA ACTACAGAAC
ACAGATAAAG TAGAGTTGGA TGAACTAGCA TTGAAGCTCA CCGGATTAAC GGGGCGAATT
TTAATTGCAG GGCATACGGA TTACCAAGGC TCACAAAGTT ATAATGAGCA ATTAGCAAAA
GAACGTTCAA TGGCTGTTCA AAACTATTTG AAGACGAAGG TCGACCCATC TCAATTTATC
TGGGAAATAA AATCGTTTGG TGAAGATTCT CCTATTATTG AAGAGCGCTC ATTAAAAGCC
AATGCCGCTA ATCGACGTGC GTTTGTCGTT TTTAAAGAAG GCCCATTACC AAAAGAAAAG
ATCGAGTCAC TAACGGAGAA GTAA
|
|---|
| Protein sequence | MMTMTMKSLL LGFGFFSLFG CSTDTYVSKE NIDKYDERVQ KFLIAECLVP QREIQMAVAE
HFEFDKSELK ETDYASLNQF VNSIKRFKGR IAIVGHTDYQ GSVSYNEELS RQRAESIKAY
LSEKLVVSNY EWEVKYYGEK RPFIKGRSLE ANAANRRAYL VFEQTIDKEL NPACLPPEPK
RKVYVTMASH FAFDKDELQN TDKVELDELA LKLTGLTGRI LIAGHTDYQG SQSYNEQLAK
ERSMAVQNYL KTKVDPSQFI WEIKSFGEDS PIIEERSLKA NAANRRAFVV FKEGPLPKEK
IESLTEK
|
|---|
| |