| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0445 |
|---|
| Symbol | |
|---|
| ID | 6961876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011313 |
|---|
| Strand | - |
|---|
| Start bp | 505172 |
|---|
| End bp | 505972 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 643381738 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_002264778 |
|---|
| Protein GI | 209809240 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGAA TATTATTATC TTTTGTTAGC CTATGCCTAC TTTTTAGTAG CTCGGCCTTT
TCAGAATCAA TGACACCCAA TGTAGATAAG ATAAAAGAAC GTGGCACACT TAAAGTAGGT
CTCAGTACTT TTGTCCCTTG GGCTATGCGT GATACGCAGG GTAATTTGAT CGGTTTTGAA
GTTGATGTTG CGAAACGCCT TGCTAAAGAC TCTGGCTTAG ACATTGTTTT CATACCTACA
GCATGGGATG GCATTATTCC TTCTCTGATC TCAGGAAAAT TCGATGTGAT CATTGGTGGA
TTAACCATTA CTGATGAACG AGCAAAAAGT GTTTTATTTA CGACCCCTTA TTCACACTCT
GGTGTACAAG TTGCTGCAAA TAAAAAATTA ACGGAAGGCT TTACTCGTGA GCAATTCAAT
TCTCGCCGTG TAAAAATTGC CGTTCGTCGT GGTGCCGTTA CCGTTGCCGC CGTTAGAGAA
AGCTTCCCTA AAGCAAAAGT CCTTCAATTT GATGATGATG CCCAAGCGTT TCAAGAAGTA
TTAAATGGCA ATGCTCATGC GGTTGCTGCT TCAACACCAA AACCAGAGTT TGATGCTATC
AAATATTCTG ATGTGCTTTA CCTTCCTTTC AAAGAGCGCC TTTCTGAAGG AAATGAAGCT
TTTGCTGTAC GTTTAGGCGA AGATGATAAA AAAGCATTTT TTGACCAATG GATTAAAGAC
CGAACTGAAG ATGGTTGGTT AAAAGAACGC TACGATTATT GGTTTACTAG CCTAGATTGG
CAGTCACAAA TAGCGAACTA A
|
|---|
| Protein sequence | MKRILLSFVS LCLLFSSSAF SESMTPNVDK IKERGTLKVG LSTFVPWAMR DTQGNLIGFE
VDVAKRLAKD SGLDIVFIPT AWDGIIPSLI SGKFDVIIGG LTITDERAKS VLFTTPYSHS
GVQVAANKKL TEGFTREQFN SRRVKIAVRR GAVTVAAVRE SFPKAKVLQF DDDAQAFQEV
LNGNAHAVAA STPKPEFDAI KYSDVLYLPF KERLSEGNEA FAVRLGEDDK KAFFDQWIKD
RTEDGWLKER YDYWFTSLDW QSQIAN
|
|---|
| |