Gene VSAL_II0254 details

Gene Information

• Locus tag: VSAL_II0254
• Symbol: speA
• ID: 6961718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: +
• Start bp: 281869
• End bp: 283794
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643381561
• Product: arginine decarboxylase
• Protein accession: YP_002264603
• Protein GI: 209809065
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.164965
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGGTCTC TAGATTTGGA ACATTCGGTT AATTTGGAAC GCATCCGTGC TGAGTATAAT 
GTAAAGCATT GGAGCCAAGG TTTTTATGGT ATTGATGATA ATGGCGAAGT ATATGTTTCG 
CCTCGTAGTG ATACTGATCA TCAAGTCCCA TTAAGTCATA TTGTGAATCA GTTAGAGCAA 
CGAAATATTG GATTGCCTGC TTTGGTTCGT TTCCCTCAAA TCGTACATCA GCGTGTGCAT 
AGTATTTGTA ATGCATTTAA CCAAGCGATT GATGAATATC AGTATGAAAA CCATTATTTA 
TTAGTTTATC CAATCAAGGT TAATCAACAA AAGGAAGTCG TTGATGAGAT CTTGGCAAGC 
CAAGCGCAAT TGGAACAGAA ACAATTAGGC TTAGAAGCGG GCAGTAAGCC TGAGTTATTA 
GCCGTATTGG CCCTAGCGCA AAAAGCGAGT TCAGTGATTG TATGTAACGG TTATAAAGAC 
CGTGAATACG TACGTCTGGC GCTTATCGGT GAAAAGCTGG GTCACAGCGT CTTCATCGTA 
TTAGAAAAAT TATCAGAATT AGACTTGGTG TTATCTGAAG CAAAAGCATT AGGAGTAACA 
CCAAGATTAG GTTTGCGTAT CCGTCTTGCA TCGCAAGGTG CGGGTAAATG GCAAGCAAGT 
GGTGGAGAAA AGTCTAAATT TGGTTTATCT GCGTCTCAAG TATTAACGGT GATTGATCGT 
TTAAAAGCAC AAGGCCAGTT AGATATTCTA GAGCTTGTGC ATTTCCACTT AGGCTCACAA 
ATGGCGAACA TTCGCGATGT GCGTAATGGC GTAAGTGAAG CGGCACGATT CTACTGTGAA 
TTACGTGATA TTGGCGCAGA GCTAAAATAC CTTGATGTTG GCGGCGGTTT GGCGGTCGAT 
TACGATGGTA CTCGTAGCCA ATCATCGAAC TCGATGAACT ACGGGTTAAC AGAATACGCG 
CGTAATATCG TGACCACCAT CGGTGATATT TGTCAGTTAT ATTCACAACC AATGCCAGTG 
ATCATTTCTG AATCAGGTCG TTCGTTGACA GCCCATCACG CGGTGTTAAT TACCAATGTG 
ATCGGCACAG AAAGCTACAC ACCAGAAGCG ATTGAAGCCC CTCATTGTGA TGCACCGTTA 
TTGTTGCACA ACATGTGGCG TAATTTAGAA CAGCTTGAAA ATGGCAGTGA TGATCGCGCA 
TTAATTGAGA TTTACAACGA CACACAATGC GATGTCTCTG AAGCGCATAA TCAATTTGCA 
ACGGGGATGA TCAATCTTCA GCACCGTGCA TGGGCAGAGC AAGTTTCATT ACGTATTAAC 
TACGAGTTAA GCGTAAAAAT GAGCACAAAG AACCGCTACC ATCGCCCAAT TTTAGATGAA 
TTGAGTGAGC GTTTAGCTGA TAAGTTCTTT GTTAACTTTT CTCTATTCCA ATCGTTGCCT 
GATGCATGGG GTATTGACCA AGTTTTCCCT GTATTACCAT TGAGTGGCCT TGATAATGCA 
GATGAACATC GTGCCGTCGT ACTCGATATT ACCTGTGATT CTGACGGTAT TATTGATCAA 
TACGTTGATG GTCAAGGCAT TGAAACAACC TTGCCAGTGC CGGCGTGGAA CCCTGATGAA 
CCGTACTTAA TGGGCTTCTT CTTAGTGGGC GCATACCAAG AGATCTTGGG TGATATGCAT 
AACCTCTTTG GTGACACGCA CAGTGTGGTT GTGAATGTTA ATGAAAACGG TGAAGCCAAT 
ATTGATTACA TCAATGAAGG TGACACTGTC GAAGACATGA TGCGTTATGT GCATATCGAT 
GTGGATTTGA TCCGTCAAAA CTACAAAGAC ATGGTCACTG CTAAAGTGGC AAAAGAAGAA 
CAACAAAGCG TGCTTGAAGA ATTAGAGCAA GGCTTGATGG GTTACACCTA TTTGGAAGAT 
TTTTAA 

 

Protein sequence

MRSLDLEHSV NLERIRAEYN VKHWSQGFYG IDDNGEVYVS PRSDTDHQVP LSHIVNQLEQ 
RNIGLPALVR FPQIVHQRVH SICNAFNQAI DEYQYENHYL LVYPIKVNQQ KEVVDEILAS 
QAQLEQKQLG LEAGSKPELL AVLALAQKAS SVIVCNGYKD REYVRLALIG EKLGHSVFIV 
LEKLSELDLV LSEAKALGVT PRLGLRIRLA SQGAGKWQAS GGEKSKFGLS ASQVLTVIDR 
LKAQGQLDIL ELVHFHLGSQ MANIRDVRNG VSEAARFYCE LRDIGAELKY LDVGGGLAVD 
YDGTRSQSSN SMNYGLTEYA RNIVTTIGDI CQLYSQPMPV IISESGRSLT AHHAVLITNV 
IGTESYTPEA IEAPHCDAPL LLHNMWRNLE QLENGSDDRA LIEIYNDTQC DVSEAHNQFA 
TGMINLQHRA WAEQVSLRIN YELSVKMSTK NRYHRPILDE LSERLADKFF VNFSLFQSLP 
DAWGIDQVFP VLPLSGLDNA DEHRAVVLDI TCDSDGIIDQ YVDGQGIETT LPVPAWNPDE 
PYLMGFFLVG AYQEILGDMH NLFGDTHSVV VNVNENGEAN IDYINEGDTV EDMMRYVHID 
VDLIRQNYKD MVTAKVAKEE QQSVLEELEQ GLMGYTYLED F