| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_II0144 |
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| Symbol | |
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| ID | 6961621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011313 |
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| Strand | + |
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| Start bp | 166914 |
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| End bp | 168359 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643381464 |
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| Product | membrane associated GGDEF protein |
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| Protein accession | YP_002264506 |
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| Protein GI | 209808968 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAGA GGACAACGGT TTTTTATAGC TCTATGTTAT TTGTGATGTT AATTTCTACA
GTATTAATTA TTACTATTTC AAATAATTAT CAGCAGCATA ATAAAAGATT GGAAAGTGAA
TTAAGGTTTA ATGCAAACTT TGTTTCTACG TGGTTAAATT TAGTATACAA GCATTCAAAT
AACGTTTTAG AAGGAATGGC AACGGATCTT TATAACAATC ACTTATTGAC TGTTCCTTTG
AATCCAATGG TATTAAATGA GCAAAAAAAA TTACTCAATA TAGAAGCGGA GATGCTTATT
AATGCATCAA CTATATTTGC TATTAACAAC AAATGTATTT TAGTTAATGC AATTTCAGAC
GTTGGTGCTG ATCTTTCTTC TCGTGAGTAT TGTAAACAAA TACAAGAAAG CAATAAGCAT
ACTATTTTCA CTGATCCGTT CGTGGATTTA TTTGGGAAAA CAGTTGTTGC TCAAGGGGTT
AGGATTACCA ATAAATCAGA TCAGTTTATA GGTATGGTTG GTATTTTAAG CGGGTTAGAC
TTTTTCTCTA GTGCTTTAAG TGCCTTGGAT ATATCGACAA AATCATCCGT GTCAATTTTA
AGTTCTGATC TTATGGTATT AGCGACCAAT AGAACTGAAT TACTTAAGAT CGGTAGCCGC
CCTGTGATTA GTAAAGAATC GACTGAAATA CTTCAGGGTT TAGCTGATAA TCAAGAGGTG
TTTTTTGAAG CGATGAGAAA GCACCACGGT TTTAATCAGA TGGTGTTTGC AAAAAAAGTA
CCGGGTTACC CTTTTATTTT AATCGTATCG AAGCCTAAGT ATTTTTGGGC TGATTATGCG
TACCTTTCTA TTATTTCTTT TATTTTAGTT ATTTCGTTGG TGGTTGCGTT ATTAATGAAA
AATACGTTTC TATTATCCAA ATTACTTTCC CAAAATGATC ATTATTTTAA GCTCGCATTA
CATGATGAAT TAACGGGGGT TCTAAATCGT CGAGGATTTG AAAAAAATAC CAAACAGGTA
CTTGAGTTGG CAAAATCCAG CCCAACCTCA ATTGTCTCGG TTTTGTTTGA TATTGATTAT
TTTAAACAGA TTAATGATAC CTATGGGCAT GATAAAGGGG ATGAAGTATT ACGAAGCTTT
ACTCAAATAT GCCAAGCACA CATCACTCAC TGCGATGTGT TTGCGAGACT CGGTGGTGAT
GAGTTTGTCA TGCTTTTACC AAACCAAAAT GGGCAACAAG CCACGAAATG TATTAATGAG
CTGTTAGATA AGATAAGAGC GATACGCGTT GAAACACCAT TAGGATCAAT ATCGGTATCG
AGCAGTATCG GAATGTCAGA GGTACGTTCG CCTAACGAGT CAATTGCTAA GTGGTTAGAA
AGAGCAGATA AAGCACTTTA TCAAGCGAAA AAACAAGGTC GTAACTGTGT GGTTTTAAAG
GCTTAA
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| Protein sequence | MKERTTVFYS SMLFVMLIST VLIITISNNY QQHNKRLESE LRFNANFVST WLNLVYKHSN
NVLEGMATDL YNNHLLTVPL NPMVLNEQKK LLNIEAEMLI NASTIFAINN KCILVNAISD
VGADLSSREY CKQIQESNKH TIFTDPFVDL FGKTVVAQGV RITNKSDQFI GMVGILSGLD
FFSSALSALD ISTKSSVSIL SSDLMVLATN RTELLKIGSR PVISKESTEI LQGLADNQEV
FFEAMRKHHG FNQMVFAKKV PGYPFILIVS KPKYFWADYA YLSIISFILV ISLVVALLMK
NTFLLSKLLS QNDHYFKLAL HDELTGVLNR RGFEKNTKQV LELAKSSPTS IVSVLFDIDY
FKQINDTYGH DKGDEVLRSF TQICQAHITH CDVFARLGGD EFVMLLPNQN GQQATKCINE
LLDKIRAIRV ETPLGSISVS SSIGMSEVRS PNESIAKWLE RADKALYQAK KQGRNCVVLK
A
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