| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I3031 |
|---|
| Symbol | |
|---|
| ID | 6988035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 3281316 |
|---|
| End bp | 3282278 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643381306 |
|---|
| Product | O-antigen biosynthetic gene WbjF |
|---|
| Protein accession | YP_002264352 |
|---|
| Protein GI | 209696421 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCGAAAA TATGCACAAC TAATTTTAGA CCTGAAGCGG TATTGTTAAC CGGAGTCAGT
GGGTTTATTG GTTCTGTTGT AAATAAATAT CTTGATTATC GCTGTTTAGT TGCTAGTCGA
GAATTAGATG AAAAATCATC TAATTCTCGA CAGATATTAA TGTCTGATCT ATTCGATTCA
AAAAAAACAT CAATCATTTT TGCACAGATA GAACAAGTCA TACATTTAGC TGGTCTTGCT
CACAATCATT TATTTACTGA CGCAGATTAT CAATCGGTTA ATGTTGATGG AACCTTACAT
TTAGCCAATG AAGCCGCTAA AGCTGGCGTT AAACGTTTCG TTTTTGTCAG TTCTATTCGT
GTTAATGGCA CATCAACCAC CAATACCCCT TTTTCTATTC TGTCTGATTT GCAACCACAT
AATGCGTATG CGCAATCAAA ATATGATGCT GAAATTGGCT TAAAAAAAAT AGCTAAAGAA
ACAGGCATGG AATTGGTTAT TGTTCGGCCG ACATTAGTCT ATGGTCCTAA TGCCCCTGGT
AATTTTGGCA CTTTAACGCG TTTGGTTAAT AAAGTGCCTC TCTTACCATT TGGTCTAACT
CAGAATAAGC GCGATTTTAT TTCTGTACAG AACCTAGCTG ATTTATTGGT GACGTGTGCG
AAACATCCCA ATGCAGGTGG TCATACTTTT TTAGCGTCTG AAAGTGAAAC GGTGTCTATT
AAAGGATTTA CTAATGCCAT AGCTAAAGGA CTTGGTACAA ACTTAATACA GTTACCGGTG
CCGGTTAGCT TAATGCGTTT AGGCGCTAAG CTACTTGGTA AATCACTAAT GGTTGAACAA
TTAGTTGGTA ACCTTGAAGT GGATTCTTCT AATTTAAAAG ATGTACTGGG TTGGACTCCA
CCTTATACAA TGGAACAAAC AATGGCTTCA CTTTCAGAGA CACTATCAGA GAGCAAACAA
TGA
|
|---|
| Protein sequence | MPKICTTNFR PEAVLLTGVS GFIGSVVNKY LDYRCLVASR ELDEKSSNSR QILMSDLFDS
KKTSIIFAQI EQVIHLAGLA HNHLFTDADY QSVNVDGTLH LANEAAKAGV KRFVFVSSIR
VNGTSTTNTP FSILSDLQPH NAYAQSKYDA EIGLKKIAKE TGMELVIVRP TLVYGPNAPG
NFGTLTRLVN KVPLLPFGLT QNKRDFISVQ NLADLLVTCA KHPNAGGHTF LASESETVSI
KGFTNAIAKG LGTNLIQLPV PVSLMRLGAK LLGKSLMVEQ LVGNLEVDSS NLKDVLGWTP
PYTMEQTMAS LSETLSESKQ
|
|---|
| |