| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2589 |
|---|
| Symbol | amtB |
|---|
| ID | 6988482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 2792706 |
|---|
| End bp | 2793935 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643380857 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_002263935 |
|---|
| Protein GI | 209696005 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter
[TIGR03644] probable ammonium transporter, marine subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTTT CAATTACAGT ATCAGAACTT CGTTATGCCC TTGATACCTT CTTCTTTTTA
ATGTCTGGCG CTCTTGTTAT GTGGATGGCC GCCGGCTTTG CAATGTTAGA GGCTGGTCTG
GTTCGCTCAA AAAATACCAC TGAAATTTTA ACTAAAAATC TTTGTTTGTA TGCGATAGCT
TGTACAACAT ACTTAATTGT CGGTTATAAC ATTATGTATG TTGATAATGT GAGTGGTGGT
TTTCTACCTT CATTCGGAAC ATTAATTGGA ACTCAAGTAG AAGGTGCAGA TCACTCATTA
GAGTCTGATT TTTTCTTTCA AGTTGTATTT GTTGCGACGG CAATGTCAGT TGTTTCTGGT
GCCGTGGCTG AGCGAATGAA GCTATGGTCT TTTTTAGTAT TCTCTGTGAT TTTAACCGCG
TTTATTTATC CGATGGAAGG GTATTGGACA TGGGGGGGTG GTTTCTTATC AGAAGCTGGG
TTTAGTGATT TTGCTGGTTC AGGTATTGTT CATATGGCAG GGGCTTCAGC GGCATTAGCC
GGAGTATTAT TGCTCGGTGC ACGTAAAGGT AAATACGGTA AGAAAGGTCA AATCTATCCA
ATTCCAGGAT CTAATATGCC ATTAGCAACA TTAGGTACTT TTATTTTATG GTTTGGTTGG
TTTGGTTTTA ATGGCGGCTC TCAATTGATG ATTTCTGATT TTGAAAATGC GACAGCAGTC
GGCCAAATCT TCTTAAATAC GAATGCAGCC GCAGCTGCAG GGGCGATAGC TGCGTTATTT
GTGTGTAAAA TAACGTGGGG AAAAGCCGAT TTAACAATGG TATTAAATGG GGCGTTAGCA
GGTCTTGTTG CTATCACAGC AGATCCGTTA TCACCTTCTC CTTTAGCTGC TGTTATTGTG
GGTGCAGTTG CTGGAGCGTT AGTTATTTTT AGTATTGTGG CCTTTGATAA AATTAAAATT
GATGATCCAG TAGGGGCGAT TTCAGTGCAT GGTGTTTGTG GTTTTTTTGG GTTAATGGTT
GTGCCACTGA GTAATGCGGA TGCTAGTTTT GGTGCGCAGT TATTGGGAGC GGTTGTTATC
TTTGCTTGGG TATTTATAGC AAGCCTTGTA GTTTGGGCAA TAATTAAAGC AACCATCGGA
ATTCGAGTTA CAGAGGAAGA AGAACTAGAA GGGATGGATG TTCATGATTG TGGTATTGAT
GCTTATCCTG AGTTTGTCAG TGTGAAATAA
|
|---|
| Protein sequence | MELSITVSEL RYALDTFFFL MSGALVMWMA AGFAMLEAGL VRSKNTTEIL TKNLCLYAIA
CTTYLIVGYN IMYVDNVSGG FLPSFGTLIG TQVEGADHSL ESDFFFQVVF VATAMSVVSG
AVAERMKLWS FLVFSVILTA FIYPMEGYWT WGGGFLSEAG FSDFAGSGIV HMAGASAALA
GVLLLGARKG KYGKKGQIYP IPGSNMPLAT LGTFILWFGW FGFNGGSQLM ISDFENATAV
GQIFLNTNAA AAAGAIAALF VCKITWGKAD LTMVLNGALA GLVAITADPL SPSPLAAVIV
GAVAGALVIF SIVAFDKIKI DDPVGAISVH GVCGFFGLMV VPLSNADASF GAQLLGAVVI
FAWVFIASLV VWAIIKATIG IRVTEEEELE GMDVHDCGID AYPEFVSVK
|
|---|
| |