| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2503 |
|---|
| Symbol | |
|---|
| ID | 6987792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2683155 |
|---|
| End bp | 2684855 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643380767 |
|---|
| Product | putative transport system, permease protein |
|---|
| Protein accession | YP_002263851 |
|---|
| Protein GI | 209695921 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4135] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTAC ACGTTTTCTA TGCTTTTCTT GTTGTGATCT GCATTGTCCC TATTGCTCCC
GGTCTAATTG GTGTATTAAG CTCATCATTG AGTTATATCC CCTCCATTAG ATTAACTCAG
TTTACTCTGA ATGGCTATCA TGCGGCTTTT GAGTGGAGTG GCGTTTGGCA TTCCATTTTA
TTAACGCTAT CCAGTGCAAT CATCAGTACC TTCTTTACTT GCATTATCTC CTTTGCCATT
TTGCAAAGTG GTTGGCATCG TCCTATTTGG AAAAAAATAG AACCACTTCT AGCCCCTTTA
CTTGCGATGC CCCATGTTGC TTTCGCTATT GGGTTCGCCT TTCTTTTCTC TCCAACCGGA
ATGATTGCCA GACTCATTGC TCCCATAACT AATGAACCTT TATTTTCAAT CATTAATGAC
CCGTTCAATA TCGGTCTAAT CTTAGTGCTC ATCATTAAAG AAGTGCCTTT TTTGTTACTC
ATGAGCATTC CGATAATGCA GCAGCTCAAT ATTGATAAAA CAATAAAAGT AACGACCAGT
TTAGGCTATA AGCCTCATCA AATGTGGTGG AAGTGCCTTT TTCCTCAATG GCTAAAAAAA
GCGCGCTTCC CTTTATTGGC GATCATTGCT TACAGCGTTT CAGTGGTTGA TGTGGGTTTA
ATTATTGGAT CCAGTAATCC CCCAACCTTT GCTGTTTTAG TTTGGCAATG GTTTAGTGAT
CCAGACATTA ACCTTCAGCC TAGAGCGGGC GCAGGGGCTG TTATCCTATT TATCCTGTGT
TTACTGCTAA TTGCCATTCA CCGCTTTATC GAATGGGGAA TAACAAGCTA TTGCCGAGCA
TGGCAAATCT CTGGCCGATT TGGATTTTTA TTTCCAGGGC TTTCTTTATT TGGGATGGTT
AGTAGCATTA TTGTTATCTC TTTTCCTATT ATGTGGGTAT GGAGCATCAC ACAGCGGTGG
CGATTTCCTA ATTTAACGCC TACTCAGTTC TCTCTACGGT TCTGGATTGA AGAATGGCCG
AATATTGTCC CTACCATTGC TGACAGCCTT TTTATTGCTC TTATTTCAGC AAGTATCGCG
CTTGTATTGG CATTAATTGG GCATGAATAT AGACTTAAAT ATCGTTGGCA TATCCCGCCC
CTACTGATAG CGATACCGAT GTTAGTACCC CAACTTTCTC TTTTGTTTGG TATTCAAGTT
GCCGCACTCT ATTTCTCTCA TGATTCTTAT TATATTTGGG TGATTTGGTC ACACATATTT
TTCTCTTTCC CTTATATTTT TCTTGCACTA GATGGCCCTT GGCGTAGTTT TGATCAACGC
TTAATTCAAA CTGGGTTAAG CTTAGGTAAA TCACCATTGC ATTGTTGGTT CACGATTAAA
GCCCCCTTAC TTTTTCCTGC CATTATTTAT GCGGGAGCAA TAGGGATCAG TGTCAGTTTG
GCTCAATATT TACCAACAAA GATGTTAGGA GCAGGAAGAG TGATGACGCT AACGACGGAG
GCTGTGGCAT TATCCAGTGG ATTTGATCGT CGAATTACGG CACTTTATGC ACTTTGGCAA
GCGCTGTTGC CTTTTGTTTT CTTTACGTTA GCCGTCGTTA TCGGTCGATA TTATTCTCGT
CATTCCCACA TCAATATTAA GACAAGGAAG GTTGAAGGTC ATGAGCCTAT CAATAAAGAA
TCTCACCATT TTCACTCATA G
|
|---|
| Protein sequence | MILHVFYAFL VVICIVPIAP GLIGVLSSSL SYIPSIRLTQ FTLNGYHAAF EWSGVWHSIL
LTLSSAIIST FFTCIISFAI LQSGWHRPIW KKIEPLLAPL LAMPHVAFAI GFAFLFSPTG
MIARLIAPIT NEPLFSIIND PFNIGLILVL IIKEVPFLLL MSIPIMQQLN IDKTIKVTTS
LGYKPHQMWW KCLFPQWLKK ARFPLLAIIA YSVSVVDVGL IIGSSNPPTF AVLVWQWFSD
PDINLQPRAG AGAVILFILC LLLIAIHRFI EWGITSYCRA WQISGRFGFL FPGLSLFGMV
SSIIVISFPI MWVWSITQRW RFPNLTPTQF SLRFWIEEWP NIVPTIADSL FIALISASIA
LVLALIGHEY RLKYRWHIPP LLIAIPMLVP QLSLLFGIQV AALYFSHDSY YIWVIWSHIF
FSFPYIFLAL DGPWRSFDQR LIQTGLSLGK SPLHCWFTIK APLLFPAIIY AGAIGISVSL
AQYLPTKMLG AGRVMTLTTE AVALSSGFDR RITALYALWQ ALLPFVFFTL AVVIGRYYSR
HSHINIKTRK VEGHEPINKE SHHFHS
|
|---|
| |