| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2463 |
|---|
| Symbol | |
|---|
| ID | 6987765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 2635822 |
|---|
| End bp | 2637117 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643380730 |
|---|
| Product | MFS transporter |
|---|
| Protein accession | YP_002263814 |
|---|
| Protein GI | 209695884 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACCA AAAAACACAT GAGTGAAGTC CCAATAGCCC AAAGAATAGC AGCCTATTTA
GCCATTCTTG TTGGCTATTT TTTCTACTGC TATAACTTTG TAATTATTGA TTATGTTCGC
CCTTATATTG TAGAGGCCTA CGATGGTATT AGCCTTGCTG ACACCGCACA ATTCTATACT
TGGCAATCAG TTGGGGCTCT TATTGGTGCG TTGAGTTGTG CTTGGGTTGC TTCCAACTTT
GGTAAAAAAT CGACATTAAT CGTGATCACC GCTCTCAATG GTGGCGCAAC AATTCTCAAT
ATGATGTTTA CCGATTACAC CATGTGGGCA CTAATGCGAT TCATCATCGG TATTTCACTT
GGTGGCTACT TCACTGTTGC GGTGAGTTTA ATGATTGGCC TTTTCACACC AACGGTACGA
GGAAAATTAA CCGCATTCGC TTCTTCAATG TTCTCTGTCG CTCTAATGGT CATGGGCGCT
TACGCGGCCT TCATTACCAG TATTGATGCT CCTTGGCAGA GCCTAATGTG GGTTGGTGGT
ATTCCTCCGT TAGTCGCTGC TGCCATTATG ATTTTTATTC TACCAAACGA TAAAAAGATC
ATTGCTTATG GTGAAGAAAG CGAAAACGAC GCAGCAAATA ATGACACTCC AGTGAAAAAA
GGGACCTGGG GCGAGATGCT AAGTAAGCCT TATCGCACAA TAACCATTAC TTGTTTATTA
CTGGCAGGCC TGAACTTTTA TGGATATCAA TTTTTTAGTG GCTTTGTAAC AACTTACTTA
CGCGACGTTC GCCAATTTGA CGGTGCAACC ATTGGTATGA TTTTCTCAAT ATCTGCATTT
GGTTCATTAT TTGGTGCTTG GATATGGGGA GCCGTCGCTG ATAAATATGG CCGTAAAGTA
AATGCTTTCG GCTTCATTCT TGTCGGAATT ATGGTGTCAA TTTTCTTTAT TGCGCCAAGT
GACGTCATGA TTGGTAGTTT AAATATGCTC GCTCTATTAG GGCTTATATA CAACTTTGGA
CTTTCTGCAT CTGCCGTATG GGGAGGATAT TTTTCTGAAC TGTTTCCCGC TCATCTGCGC
AGCTACGGTG CTGCACTCTT TCATGGTGGT CGTATTATCG GGATGTGGGC TCCAATGGTT
CTTGTTTTCA TTCAAGAGCG TTCAAGCCTT GAAACTACAA TGTGGGGGTC TCCAATCATC
TGGATCCTAG CGGGTCTGCT GTGGTTATCA CTACCTGAAA CGTTGAAAGA TGGCATTTTT
GATAGAAATA AAAAGCGTAA AACAGCACAA GCCTAA
|
|---|
| Protein sequence | MTTKKHMSEV PIAQRIAAYL AILVGYFFYC YNFVIIDYVR PYIVEAYDGI SLADTAQFYT
WQSVGALIGA LSCAWVASNF GKKSTLIVIT ALNGGATILN MMFTDYTMWA LMRFIIGISL
GGYFTVAVSL MIGLFTPTVR GKLTAFASSM FSVALMVMGA YAAFITSIDA PWQSLMWVGG
IPPLVAAAIM IFILPNDKKI IAYGEESEND AANNDTPVKK GTWGEMLSKP YRTITITCLL
LAGLNFYGYQ FFSGFVTTYL RDVRQFDGAT IGMIFSISAF GSLFGAWIWG AVADKYGRKV
NAFGFILVGI MVSIFFIAPS DVMIGSLNML ALLGLIYNFG LSASAVWGGY FSELFPAHLR
SYGAALFHGG RIIGMWAPMV LVFIQERSSL ETTMWGSPII WILAGLLWLS LPETLKDGIF
DRNKKRKTAQ A
|
|---|
| |