Gene VSAL_I2281 details

Gene Information

• Locus tag: VSAL_I2281
• Symbol: ccmA
• ID: 6988306
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 2454976
• End bp: 2455590
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643380559
• Product: cytochrome c biogenesis protein CcmA
• Protein accession: YP_002263643
• Protein GI: 209695713
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component
• TIGRFAM ID: [TIGR01189] heme ABC exporter, ATP-binding protein CcmA

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTAGAAA TTCGTAATGT AACCTGTATT CGAGATGAAA GAGTTTTATT TGAACAACTC 
AGCTTTACCG TATCAGACGG TGAGTTAATT CAAATAGAAG GTCAAAATGG TGCAGGAAAA 
ACCACATTAT TGCGAATTAT TGCCGGTCTT GGTTATTCTG ATGAAGGTGA TATTTATTGG 
AATGGCGAAT CGATTAAACA GAATCGAGAA GAATTTCATT CCGCGTTACT TTTTCTAGGT 
CATCACACGG GTGTAAAACG TGAGTTGACA GCATTTGAAA ATCTGGCTTT TTATCAATCA 
ATGCATAACG ACTATAATGA AGAGGCTATT TGGGATGCAC TTGCTCGTGT TGGCTTAGCG 
GGCCGAGAAG ATGTTGCAGC AGGACAATTG TCCGCAGGAC AACAGCGCAG AGTTGCATTA 
GCTCGTCTTT GGTTGAGTAA TCATAAGTTG TGGGTTCTTG ATGAGCCATT AACTGCAATT 
GATAAGCAGG GCGTTAAGGT GTTGGAGCAG TTGTTTATGG ATCACGCAAA ACAGGGTGGA 
ATTGTCTTGC TAACGACGCA TCAGGATTTA TTTACTGACA GTAATGAATT GAAAAAAATC 
AGGTTAGGTG AGTAA 

 

Protein sequence

MLEIRNVTCI RDERVLFEQL SFTVSDGELI QIEGQNGAGK TTLLRIIAGL GYSDEGDIYW 
NGESIKQNRE EFHSALLFLG HHTGVKRELT AFENLAFYQS MHNDYNEEAI WDALARVGLA 
GREDVAAGQL SAGQQRRVAL ARLWLSNHKL WVLDEPLTAI DKQGVKVLEQ LFMDHAKQGG 
IVLLTTHQDL FTDSNELKKI RLGE