Gene VSAL_I2023 details

Gene Information

• Locus tag: VSAL_I2023
• ID: 6989405
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 2166290
• End bp: 2166961
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 643380313
• Product: ABC transporter, ATP-binding protein
• Protein accession: YP_002263402
• Protein GI: 209695473
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.366076
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAAAGC TGACAAACCT GAATAAAGGG TATGTGGATG GTGGTGAATT TCATCCAATT 
CTTCAAGGAG CAGAGTTAAC AATCGAGCAA GGCGCTCAAA TTGCTTTAAT GGGCGAAAGT 
GGCTCGGGCA AAAGTACCCT TCTAAATTTG ATTGCCGGAC TTGATAGCGC TGACAGTGGC 
GAGATCGATA TTGCTGGCTT TTCAATGCAC TCTCCAAAAC AAAGCGCTAG AACGTCTTAT 
CGACGCAATA ATATAGGGCT TATTTTTCAG CAATTTAATC TTCTTCCTAC CTTAAGCGTT 
GCGGATAATA TTCGTTTTTG TCGTCAATTA AAAGGGCTGC GTGATGATGA TGCTTTGTGG 
CGTCAAATTA TCTCAGCGTT AGATTTAATG CCGCTTTTAG GTCGATACCC TGAAGAAGTC 
TCTGGTGGAC AGCAACAGCG AGCCGCGATC GCTCGTGCAT TGTATATGGA ACCAAAGTTA 
TTACTTGCCG ATGAACCTAC GGGCAGTTTA GATGAAAAAA ATGCCGAAGC AGTAATGCGA 
TTGCTTACTC GTCTTTCTCG TGATCTTCAT TGCACTTTAT TATTGGTTAC TCACAGTGAA 
AAAGTAGCGA ATCATATGGA TGGGCTTATT AAACTGCAAG GAGGAAAATT AGATGTCATT 
TCCGGTAGTT AG 

 

Protein sequence

MLKLTNLNKG YVDGGEFHPI LQGAELTIEQ GAQIALMGES GSGKSTLLNL IAGLDSADSG 
EIDIAGFSMH SPKQSARTSY RRNNIGLIFQ QFNLLPTLSV ADNIRFCRQL KGLRDDDALW 
RQIISALDLM PLLGRYPEEV SGGQQQRAAI ARALYMEPKL LLADEPTGSL DEKNAEAVMR 
LLTRLSRDLH CTLLLVTHSE KVANHMDGLI KLQGGKLDVI SGS