| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I2018 |
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| Symbol | rsuA |
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| ID | 6987518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 2160396 |
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| End bp | 2161100 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643380309 |
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| Product | ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase) |
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| Protein accession | YP_002263398 |
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| Protein GI | 209695469 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.136483 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTTTAG ATAAATTTTT GTGCGAAACA ACAGGTGCTA CCCGTAGCGA AGCTACTCGA
ATCGTTAAAA GTGGTACTGT CACTGTTAAT GGCGTAAAAA CAAAAGTGAC TTCAGTAAAA
GTAACTGACG ATTCGACCGT TGAGTGGGAT GGTCGTGAGC TTAAATTCCA TGGTCCTCGT
TATATTATGC TATTTAAGCC AGATGGTTAC GTGTGTTCAC ATGAAGACAG TACGCACCCA
TCGGCATTAA CTCTTTTAGA TGAAGTGAAT CTAGAGAAGT TACACTTTGC TGGTCGCCTT
GATGTTGATA CGACAGGGTT GGTACTGATT ACTGATGATG GCCAATGGTC ACATAAAATC
ACATCACCAA AGCGTAAGTG TCCTAAAACA TACCGAGTAT GGCTTGATGA GCCAATTGGT
GCTTATTACG CTGAGCAATT AACGGAAGGC ATTCAGCTTA AGAGTGAAAC TGGTTTAATA
ATGCCTGCAA CAATGGAAGT GGTTAATGAA GAAGAGCACG AGCTTTTATT AACGATCCAA
GAAGGCAAGT ATCATCAAGT TAAACGTATG TTTGCTGCGT TGGGTAATAA AGTTGAAGGC
TTACACCGTT CTCAAATTGG CGGTTTAGGT TTAGATTATT CATTAGAGCC TGGCGAATAT
CGTTACTTAA CCGCAGAAGA AGTAAAAGCG GTTTTGAGCA AGTAA
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| Protein sequence | MRLDKFLCET TGATRSEATR IVKSGTVTVN GVKTKVTSVK VTDDSTVEWD GRELKFHGPR
YIMLFKPDGY VCSHEDSTHP SALTLLDEVN LEKLHFAGRL DVDTTGLVLI TDDGQWSHKI
TSPKRKCPKT YRVWLDEPIG AYYAEQLTEG IQLKSETGLI MPATMEVVNE EEHELLLTIQ
EGKYHQVKRM FAALGNKVEG LHRSQIGGLG LDYSLEPGEY RYLTAEEVKA VLSK
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