| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1541 |
|---|
| Symbol | |
|---|
| ID | 6987186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1644034 |
|---|
| End bp | 1645827 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643379875 |
|---|
| Product | ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_002262975 |
|---|
| Protein GI | 209695046 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATAACA TTACTTCTCC TACAATTAAC TGGAATTGGC TACTAAGGCA AGCTCGAAGC
TATAAAAAGC GCCTATTTAG TGCTAATTTA ATCGCCATCG TCGCGACACT CATTAGCGTA
CCTATTCCAT TGTTCATGCC ATTAATGGTC GATGAAGTCC TACTTCACAA ACCGGCTACT
GGTGTTGAAT TACTAAACAC CCTGCTTCCT TCTGCATGGC AAAGCCCTGT CGGTTATATT
CTCTTAGTTC TTGTTCTTGT GATCTTAATG CGGATCATCA GCCAAATATT AAATATTATT
CAAGGCCGTC AATTCAGTCT TGTTTCTAAA ACGATTACTT ATCAGATCCG CTTACAACTG
CTTGATAAAC TCAGTCGCAT TAGCATGAAA GAATACGAGT CTCGTGGAAG CGGTGGAATC
AATTCACATA TCATTACAGA CATCGATACC ATCGATAAGT TCTTAGGCCC GACACTAAGT
CGCTTTATTG TTTCCTTTTT AACGGTACTA GGCACTGCTG GTGTTCTACT TTGGATCAAC
TGGCAACTTG GTTTATTCAT TCTTCTTGTT AACCCTATCG TGATCTATTT TTCTCGAAAA
TTAGGCAATC GAGTAAAAGA TTTAAAAAAG AAAGAAAACC AAGCCTATGA AAAATTTCAA
ACTCGATTAA TTGAAACCTT AGATGGGATT TATCAACTTC GAGCATCTAA CCGTGAACGT
ACCTTTTTAA AGCAGCTACA AGTACAAGCA GATGATATAA GAAACAGTGC CGATCAATTT
ACCTGGCAAT CAGAAGCTGC TGGTCGTCTT TCTTTTCTGC TTTTCTTATT AGGCTTTGAA
CTTTTCCGCG CTGCTGCAAT GATAATGGTA TTAATGAGCG ACTTAAGCAT TGGTCAAATG
TTCGCTATTT TTAGTTACTT ATGGGTAATG TTGTCACCAA TTCAAGAATT ATTAAGTATT
CAATTTTCTT GGTATGGCGC TTCTGCCGCA CTAAAACGAA TAAATACGTT GCTGCATATT
GATGAAGAAC CTAAAGTTAA TAGTACTGTT AACCCATTTG ATTCTCATGT AACCGCCAGT
ATTTCTATTT CTGATCTAAA CTTTAGTTAT AACGAAGATG TGCATGTCTT AAAAGATTTG
TCATTAACTA TCCATCCAGG AGAGAAAGTG GCTCTGGTTG GTGCAAGTGG TGGTGGTAAA
TCGACACTGA TCCAACTGTT ACTGGGATTA TATCAACCCA ATAGTGGTCG AATATTATTT
AATGGTCATG ACACTCGGGA CGTTGGATTT GAAAAGATTC GTAACCAAAT CTCGGTTGTA
TTACAACAAC CTATACTATT TAATGACACA CTAAGGCATA ATCTGACATT AGGCAGTGAA
TATTCTGATG ATTTATTATG GAATGCGCTT GATGTAGCTC AACTGCAAGA TGTTGTCATT
CAGCTAACAG ATGGGTTAGA GACGCAAATT GGTCGCCAAG GTGTAAAGTT ATCTGGTGGA
CAACGTCAAC GATTGGCCAT TGCGAGGATG GTGTTAACCG ATCCTAAATT TGTTATTTTA
GATGAAGCAA CCTCTGCACT GGATACTGCA ACAGAAGCGG CATTACATAA GGCATTAAGT
GATTTCTTGG TAGGACGCAC AACACTCATT GTTGCTCATC GACTAAGTGC CGTAAAACAA
GCCGATACGA TTTATGTTTT AGATGACGGA AAAGTAACTC AATCAGGAAC TCATCATGAA
CTCGTTACAC AACAAGGACT CTATCAGACA CTTTATGGAT CAATACAAAG TTAA
|
|---|
| Protein sequence | MNNITSPTIN WNWLLRQARS YKKRLFSANL IAIVATLISV PIPLFMPLMV DEVLLHKPAT
GVELLNTLLP SAWQSPVGYI LLVLVLVILM RIISQILNII QGRQFSLVSK TITYQIRLQL
LDKLSRISMK EYESRGSGGI NSHIITDIDT IDKFLGPTLS RFIVSFLTVL GTAGVLLWIN
WQLGLFILLV NPIVIYFSRK LGNRVKDLKK KENQAYEKFQ TRLIETLDGI YQLRASNRER
TFLKQLQVQA DDIRNSADQF TWQSEAAGRL SFLLFLLGFE LFRAAAMIMV LMSDLSIGQM
FAIFSYLWVM LSPIQELLSI QFSWYGASAA LKRINTLLHI DEEPKVNSTV NPFDSHVTAS
ISISDLNFSY NEDVHVLKDL SLTIHPGEKV ALVGASGGGK STLIQLLLGL YQPNSGRILF
NGHDTRDVGF EKIRNQISVV LQQPILFNDT LRHNLTLGSE YSDDLLWNAL DVAQLQDVVI
QLTDGLETQI GRQGVKLSGG QRQRLAIARM VLTDPKFVIL DEATSALDTA TEAALHKALS
DFLVGRTTLI VAHRLSAVKQ ADTIYVLDDG KVTQSGTHHE LVTQQGLYQT LYGSIQS
|
|---|
| |