| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1482 |
|---|
| Symbol | |
|---|
| ID | 6987131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1592965 |
|---|
| End bp | 1593717 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643379821 |
|---|
| Product | glucose 1-dehydrogenase |
|---|
| Protein accession | YP_002262921 |
|---|
| Protein GI | 209694992 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.350696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTC CAAAAGTGGC GGTTATTACC GGTGGTGGTC GAGGCATTGG TGCAGCAACC
TCACTACTTT TTTCAAGAGA AGGTTATGCG GTGTGTATCA ACTATAAATC GAACGCAGTC
GCCGCGAATA AATTAGCTAA AACAATAATC GCAGAAGGCG GGAAGTGCAT TACGGTTCAA
GCGGATGTGT CTTGCGAAGA AGAGGTCACT CGACTATTTT CTACGGTTGA TAGTGAATTA
GGTACGCTAT CTGTTCTTGT TAATAATGCT GGTATTTTGA AAACGCAATC ACGCTTAGAA
GACATGACGG CTGATCGGAT CAACGCCATA CTTACAAATA ATGTCACGAG CTATTTTTTA
TGTTGTAGAG AAGCGGTCAA GCGTATGTCT ACTCGACATG GTGGTTTAGG TGGTGTGATT
GTTAATGTGT CTTCTGGTGC CGCACGGTCG GGCTCTCCCA ATGAGTATAT CGATTATGCC
GCGTCAAAAG GTGCGATTGA TACTTTAACG AAAGGGTTGT CTTTGGAAGT TGCAGCAGAA
GGCATTCGAG TTAATTGTGT TCGCCCGGGG TTAATTCATA CCGATATGCA TGCCGATGGC
GGAGAGCCAG AGCGAATAGC AAGGTTGAAG AGTGTGATTC CGCTACAAAG AGGGGGTGAA
CCAGAAGAAG TTGCCGAAGC CATTTATTGG TTAGCCTCAG AGAAATCGTC ATTTTCTACA
GGGAATTACT TAGATTTAGC TGGCGGCTTG TAA
|
|---|
| Protein sequence | MSTPKVAVIT GGGRGIGAAT SLLFSREGYA VCINYKSNAV AANKLAKTII AEGGKCITVQ
ADVSCEEEVT RLFSTVDSEL GTLSVLVNNA GILKTQSRLE DMTADRINAI LTNNVTSYFL
CCREAVKRMS TRHGGLGGVI VNVSSGAARS GSPNEYIDYA ASKGAIDTLT KGLSLEVAAE
GIRVNCVRPG LIHTDMHADG GEPERIARLK SVIPLQRGGE PEEVAEAIYW LASEKSSFST
GNYLDLAGGL
|
|---|
| |