| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1152 |
|---|
| Symbol | trpD |
|---|
| ID | 6989328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 1253315 |
|---|
| End bp | 1254322 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379530 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_002262629 |
|---|
| Protein GI | 209694701 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.76543 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAA TTGAAGCCAT TTTTAATAAG CTATACAGCC AAGTTTCTCT TTCAGAAACT
GAGAGCCAAA TTCTATTTGA TGCCATCATC AAAGGTGAAC TTGATCCAAT CCTATTAACC
GCAGCGCTAA CGTGTTTAAA AATTAAAGGC GAAACGCCAA ATGAAATCGC TGGGGCCGCA
AAGGCATTAC TTAAAAACGC GAATCCATTT CCTCGTCCTG ACTATGACTT TGCGGACATT
GTAGGTACTG GCGGTGATGG CTCAAACACA ATCAATATTT CTACTACGGC CGCATTTGTT
GCTGCCGCGT GTGGATTGAA AATTGCAAAA CACGGTAATC GTGGCATTTC AAGTAAGTCG
GGATCATCTG ATTTACTGGA TTCGTTCGGC ATCAATTTAG CAATGTCAGC AGAAGACACT
CGTAAAGCCG TTGATGACTT AGGTGTTGCC TTCTTATTTG CACCGCACTA TCACGGTGGT
GTTCGACACG CGATGCCAAT TCGCCAAACC ATGAAAACCC GTACCATCTT TAATATTCTA
GGTCCATTGA TCAACCCTGC TCGTCCTAAC ATCGAATTAA TGGGTGTGTA CGATGAATCT
CTTGTTCGCC CGATTGCTGA AACCATGGTT AACATGGGCA TGAAACGCGC TGCAGTTGTC
TTTGGTTCTG GTCTTGATGA AGTCGCTATT CACGGTCCAA CAACCGTAGC AGAAATTATT
AATGGCGAAA TAAAAGAATA CACACTAACC CCAGAAGATT TTGGCTTAGA AACTCATCCC
CTAGATGCGA TTAAAGGGGG AGAACCAGAA GAAAATAAAG CCATTATTAC TGACATTTTG
ACAGGTAAAG GCACTGATGC ACAATTAGGT GCGATAGCCG TAAATGTATC GTTATTAATG
CGTTTATTTG GCCATGAAGA TTTAAAAGCC AATGCACAGA AAGCCATTGA TGCAATGAAC
TCTGGCAAAG CATTTACATT AGTTCAGCAA TTAGCGGCAC GAGGATAG
|
|---|
| Protein sequence | MTQIEAIFNK LYSQVSLSET ESQILFDAII KGELDPILLT AALTCLKIKG ETPNEIAGAA
KALLKNANPF PRPDYDFADI VGTGGDGSNT INISTTAAFV AAACGLKIAK HGNRGISSKS
GSSDLLDSFG INLAMSAEDT RKAVDDLGVA FLFAPHYHGG VRHAMPIRQT MKTRTIFNIL
GPLINPARPN IELMGVYDES LVRPIAETMV NMGMKRAAVV FGSGLDEVAI HGPTTVAEII
NGEIKEYTLT PEDFGLETHP LDAIKGGEPE ENKAIITDIL TGKGTDAQLG AIAVNVSLLM
RLFGHEDLKA NAQKAIDAMN SGKAFTLVQQ LAARG
|
|---|
| |