| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0952 |
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| Symbol | nqrD |
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| ID | 6988909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1049684 |
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| End bp | 1050313 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 643379344 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit D |
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| Protein accession | YP_002262447 |
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| Protein GI | 209694519 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
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| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.500527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATACTA AAGATCTTAA AAAGAATATT TTAGCGCCAG TATTGGATAA CAACCCAATC
GCGTTGCAAG TTCTTGGTGT ATGTTCTGCG CTTGCAGTAA CAACGAAATT AGAAACAGCA
TTTGTTATGA CTATTGCAGT AATGTTTGTT ACTGCATTCT CTAACTTTTT TGTTTCATTA
ATTCGTAATC ATATACCTAG TAGTGTGCGT ATTATTGTTC AAATGGCAAT CATCGCATCA
TTAGTAATTG TTGTTGACCA AATCTTAAGA GCTTATCTTT ACGATATTTC TAAGCAACTG
TCTGTTTTTG TCGGTCTGAT TATTACAAAC TGTATTGTAA TGGGACGTGC TGAAGCTTTT
GCTATGAAAT CTAAGCCGTT ACCATCTTTT ATTGATGGTA TTGGCAATGG TTTAGGCTAT
GGTTTTGTTC TTATCACTGT TGCATTTTTC CGTGAGCTAT TAGGTTCTGG TAAATTGTTT
GGTGTTGAAG TTCTTCCGTT AGTTTCTAAT GGCGGTTGGT ATCAACCAAA TGGCTTAATG
TTACTAGCAC CATCAGCATT CTTCTTAATT GGTTTTATGA TTTGGGCTAT CCGTATCTTT
AAGCCTGAAC AAGTAGAAGC GAAGGAGTAA
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| Protein sequence | MNTKDLKKNI LAPVLDNNPI ALQVLGVCSA LAVTTKLETA FVMTIAVMFV TAFSNFFVSL
IRNHIPSSVR IIVQMAIIAS LVIVVDQILR AYLYDISKQL SVFVGLIITN CIVMGRAEAF
AMKSKPLPSF IDGIGNGLGY GFVLITVAFF RELLGSGKLF GVEVLPLVSN GGWYQPNGLM
LLAPSAFFLI GFMIWAIRIF KPEQVEAKE
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