| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0567 |
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| Symbol | |
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| ID | 6988772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 623013 |
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| End bp | 624350 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643378952 |
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| Product | sigma-54 interacting regulatory protein |
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| Protein accession | YP_002262087 |
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| Protein GI | 209694159 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.27911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTACTC AGTTTCGTAT GGATTCGGTT CCTGGTTCAT TAGTTGTCGT TGGTGGTAGC
TACGAACCTT GGTTAGCGGT CTTAGAACAA GTAGGTTGGC GTTGTCACCG TTGTTACGAC
TTACGTGCAG CACAAACATT ATTTGACGAA ATTGGACCAT GTATTGGGAT TGTTGATTTA
AGCCAAGATG ATTTCAGTTT AAATGGAATT GCCACGCTAG TTAATAATAA TAAACAAGTG
CGTTGGATCG CGTTTATTCG TGAATCTCAA CTGGGTTCTG ATACGATTTG CCAATTTATT
GTGAATTTTT GTATCGACTT TTTTACCGCT CCAATTCCTG ATGCGCAGCT ATTGAGTACT
ATCGGCCATC AACTGGGAAT GCTAAAGCTT GAGCGTAAAG TATGGCCAAA TTTGGGAAAT
AAATCAGATT TAGGTATTTT AGGTGAGGCG CCAGCAGTGA AACGCCTAAG AGATCAGATC
CGAAGAGTTG CCCCTACCGA TGTCTCTATT TTAATTTCGG GTGAGAGTGG TGTAGGTAAA
GATGTCGTTG CTAAAGCGGT GCATGATTCT TCAGGTCGTA ATAAAGGTCC CTTTGTATCG
CTGAACTGTG GTTCATTGTC TGAAGTGAAA ATTGAACAAG AATTATTTGG TTTGAATTCT
GAATTCCCAG AAACATCAAA ATTATTACAA GCCAATGGTG GTACATTATT TTTAAATGAC
ATTAATGATT TACCAGTCAG CCAACAACAA CTTTTATTAC GTTTTCTACA AGAAAGCAAT
ATGGAAACGC CTCAAGGACT TGTTGATCTT GATGTTCGAG TTATTGTTGC AAGTCATATT
GATCTTGAAA AAGCGATCGA AGAAGGGGAC TTCAAGGAAG AGCTTTATTA TCGCTTAAAT
GTATTGCGTA TTCATGTACC TGCATTAAAA GAACGCAGTT CAGACATTTC GATTCTAGCA
GAGCATTTTT TACAGCGATA TGCGAAAGAA TATAATACTC AGGCACGTAC TTTCTCAGAA
GAAGCACTAC AAACGATGAT TCATTACCCA TGGCCTGGTA ATGTGAGAGA GCTGGTTAAT
CAAGTGAAAC GAGCGGTATT ACTTGCTGAT AGTATGACGA TTGATCTTGA GCATTTGGAT
CTTCCTCAGC GTAATGATAC AAAACGCAGT TTACGCACAA TCCGTGAAAA TTCAGAACGT
GATGCTTTAC TATTGGTTCT GGAATCACAT GATGGTCAAG TATCATCAGC AGCGAAAGAG
TTAGGGGTAT CCCGTGCTAC GATGTACCGT TTATTGAATA AACATAACCT TATTTCTGAG
CCAAGAACAT ACAGTTAA
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| Protein sequence | MGTQFRMDSV PGSLVVVGGS YEPWLAVLEQ VGWRCHRCYD LRAAQTLFDE IGPCIGIVDL
SQDDFSLNGI ATLVNNNKQV RWIAFIRESQ LGSDTICQFI VNFCIDFFTA PIPDAQLLST
IGHQLGMLKL ERKVWPNLGN KSDLGILGEA PAVKRLRDQI RRVAPTDVSI LISGESGVGK
DVVAKAVHDS SGRNKGPFVS LNCGSLSEVK IEQELFGLNS EFPETSKLLQ ANGGTLFLND
INDLPVSQQQ LLLRFLQESN METPQGLVDL DVRVIVASHI DLEKAIEEGD FKEELYYRLN
VLRIHVPALK ERSSDISILA EHFLQRYAKE YNTQARTFSE EALQTMIHYP WPGNVRELVN
QVKRAVLLAD SMTIDLEHLD LPQRNDTKRS LRTIRENSER DALLLVLESH DGQVSSAAKE
LGVSRATMYR LLNKHNLISE PRTYS
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