| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0480 |
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| Symbol | mshO |
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| ID | 6988841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 535418 |
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| End bp | 536173 |
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| Gene Length | 756 bp |
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| Protein Length | 251 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643378861 |
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| Product | exported protein MshO |
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| Protein accession | YP_002262004 |
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| Protein GI | 209694076 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.772217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACCGGC AACGTGGTTT TACTTTAATT GAACTGATAC TAACCGTCGT GGTAGTGGCT
ATTGTCGCTA TGGCGGCAAG CAATACCTTA TTACTTGGAT TTCAAAGCTA CAGCACCAGT
ATCGATCGTC AGGATACTCA AATGCAGGCT AAATTTGTGA TTGAAAAATT CAGTCGAGAA
TTACGCCATG CTGTGCCCAA TAGTATAGAT GCATCAAATG GGGGCGAATG CGTTAGCTTT
GTTTCTATAG AGGCGAGTGC GTTTTATCTG TCTCTTCCTC TTGTGGGAGA AGACAGTATT
GACACCGTCA TCATGTCGAC GAATTTTTTG GATCTTGATA ATACAAGATT AACGATAAAC
CCGAGTACAC AAAAGGATCT TATTGAGGCG AGCAGTTTAA GGTATGTTTC TGTTAACTCG
GTCTCGATGT CTTCTGGTGT ATCAACCATC AATTTTTCAT CAAATAATAA TCCTGCTTTT
ATCTCTAATT CAACGTCTGA GCGGGCATTT TTTTATCAGC CTGAAGTGAT TGAATATTGT
ATTCAGGATA ATGGCGTGTA TCGCTCACGT ATTAACGCAT CTGGTGATCG TGTTTCAACG
GTTCAACTTG CCAATCAGGT CAGCAGCGGT AAATTTGAGT TTGAAAGTGC CTCAATGCAT
CGAAACAGTA CCGTTCGGAT GGTGTTAGCT TTTACTAATG GTCTCGATGA AGTAACTCAA
TATCAACATG ATGTGCAGGT GATGAATGTT CCATAA
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| Protein sequence | MNRQRGFTLI ELILTVVVVA IVAMAASNTL LLGFQSYSTS IDRQDTQMQA KFVIEKFSRE
LRHAVPNSID ASNGGECVSF VSIEASAFYL SLPLVGEDSI DTVIMSTNFL DLDNTRLTIN
PSTQKDLIEA SSLRYVSVNS VSMSSGVSTI NFSSNNNPAF ISNSTSERAF FYQPEVIEYC
IQDNGVYRSR INASGDRVST VQLANQVSSG KFEFESASMH RNSTVRMVLA FTNGLDEVTQ
YQHDVQVMNV P
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