Gene VSAL_I0478 details

Gene Information

• Locus tag: VSAL_I0478
• Symbol: mshC
• ID: 6988837
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 534214
• End bp: 534828
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 643378859
• Product: type IV pilus, prepilin-like protein (MSHC)
• Protein accession: YP_002262002
• Protein GI: 209694074
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.993627
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGTTC CACGTATTAA ATTACAGCAA ATAAAACGAA TAAAAATCAA TGGATTTACA 
TTAATTGAAT TAATAGTCGT GATCGTACTA TTAGCGATTA TTGCTGCTTA TGCATCGAGT 
AAATACATGG GAGTGAGCCG TTTTTCGTCG GCCGCCGCAC AAGAACAAGT CATGTCTATT 
TTACGTCAGA TCCAAGTCGC TTCAATGCAA ACCAATATCC CGATAAATGA GACCAGTAAA 
GATGGGGTAG ATGAGTGTCG AATTCTACAT CTCGCTTCAG ATAAATTTGG CGTATCGCAA 
GCATGCCAAA ATCAAAATAT GAACAGTGCG GTGTTGTCTG ATTATTCAAA AGAGACAAAT 
CAACAACAAC TCGAATTAAT GAAATTAAGT TATGAGTTTA CTAATAGTGA TGGTGCTATT 
TCGATATCTC AATTGTCATT TGATTTATTA GGACGACCTA TTATTCCACT TTCTTCTGCT 
ACCTCTTCTT TATGCTCAGG GGAGGATTGC CGAATAACGA TAACAACCTC TTCGTCTAAT 
GAAAGTCGCT CTGTATGTAT TAATGGTGAA GGCTTTATTT ATCGCTCAAT TCTGGATGAA 
GGCTGCGGAT TATGA 

 

Protein sequence

MKVPRIKLQQ IKRIKINGFT LIELIVVIVL LAIIAAYASS KYMGVSRFSS AAAQEQVMSI 
LRQIQVASMQ TNIPINETSK DGVDECRILH LASDKFGVSQ ACQNQNMNSA VLSDYSKETN 
QQQLELMKLS YEFTNSDGAI SISQLSFDLL GRPIIPLSSA TSSLCSGEDC RITITTSSSN 
ESRSVCINGE GFIYRSILDE GCGL