| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0466 |
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| Symbol | mshI |
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| ID | 6986516 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 522657 |
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| End bp | 524120 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 643378848 |
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| Product | type IV pilus, mannose-sensitive hemagglutinin D (MSHI) |
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| Protein accession | YP_002261991 |
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| Protein GI | 209694063 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0327432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATGA TGGATGCATT CAAGAAACTG ACACTTTCTC GTTCTATTAA AACAACGACA
TCAATTGTTC TATTACAAGG TGGTATCTAT ATCGCGAAAA GCGATGATGA TAACCAACTT
AAAGAAAGTC ATTATACTGA AATTAACCAT CCGCAAGCTT GGAAAGAAGC GTTAGTTAGT
GCTTGCCAAC AAGCTGGTGT TTCAGACTGT GGAGCCAATA TAATTGTAGG CTCTCATCTT
TATCAGTCAT TTCAAATTGA AAAACCGAAT ATTCCTAAAG AAGAGCTAAT TGGTGCGCTT
CCTTTTCTTG TTAAAGATCT TATTACGGAT CGCGTATCTG ATATTGTTGC TGATGGCATT
GAAACCAGTA ATGGTAAATT GCAGGTATAT ATTTCTCAGA TTGCCACGAT AAAGTCTATT
GTTGACCTCT TACAACCTTT CTCTATTCAA GTTATTAATA TTACGCCTGA TGAATTAACG
TGGGCAAATG CAAAACCAGA GCAAGATGGT TTTATGCTAC TTTGCCACAG TAAATCAGCA
GACTTTAAAT TATTGGCGTT TAATGAAGGG CGCTTACATT TAAATCGTTC TTTGCGCGGA
ATTAAAGCGC CTTTAACCGG CGATGAATCT AGTCACTTTC AACTCGATAA TTTAGCTTTA
GAATTACAAC GATCATTAGA TTATTTAAGT GCTCACTCGC AAGGTGTCAA TATTAATCAT
CTTTATTTTC GCTGTGATGA TGAAGATGAT TCAACGTTAT CCACTGAGCT ACAAAATCGT
TTAGGGGTCA AGGTTGCCTC ACTGCTTGTG GATGAACCAA GAGTCTTTAG AGCAGGGGAA
GTGCTGAGTT GGCTAGGGTT ATTTAATAAG CCAAATATTA ATTTATATAA TGATACCTTA
AAACCGAAAA CGGATTATTT AACATTACCC AATGCATTGA TTAGTTGGGG AGTTGGTATG
GTTCTTGTAG GTATTATTGC AGGTTACTAT CAATGGCAAC TTTATGGCGT TGAAAATAAA
GTCGCACTGG CATCATCTCA AGAAAGTATC TACAACCAAG AGCTGATTGA AGTAAATAAA
AAGTTGGCTG GGCATAAACC ATCGGCCGCT AAATTGGCGG CAATAAAGCG ATTAAAAGAC
GATATTAACG CCAAGAAAGC ATCATTAAAA ATGATCGATA ATTTTGATGA AGGGATGCAA
GTGGGGTACT CCGGTCTTAT GAGTAGCCTT ACTCAAATTG GTAAAGGGAA TATCTCCCTA
ACAAAAATTT ATATTTCTGG TAATGACGTT AATTTTACTG GTTTTGCACG AACGCCAGAT
GTTGTACCTA GTTGGATACA GAGCTTTGAA AGTGAATTGC ATTTAGTCGG TCGAACTTTT
GCTCAATTAA ACATAAAAAC AGATGAAAAA GGGGTTGTGT CATTTACTTT AAATACAACC
GTGTCAAAGG AAAGTAATGA ATAA
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| Protein sequence | MNMMDAFKKL TLSRSIKTTT SIVLLQGGIY IAKSDDDNQL KESHYTEINH PQAWKEALVS
ACQQAGVSDC GANIIVGSHL YQSFQIEKPN IPKEELIGAL PFLVKDLITD RVSDIVADGI
ETSNGKLQVY ISQIATIKSI VDLLQPFSIQ VINITPDELT WANAKPEQDG FMLLCHSKSA
DFKLLAFNEG RLHLNRSLRG IKAPLTGDES SHFQLDNLAL ELQRSLDYLS AHSQGVNINH
LYFRCDDEDD STLSTELQNR LGVKVASLLV DEPRVFRAGE VLSWLGLFNK PNINLYNDTL
KPKTDYLTLP NALISWGVGM VLVGIIAGYY QWQLYGVENK VALASSQESI YNQELIEVNK
KLAGHKPSAA KLAAIKRLKD DINAKKASLK MIDNFDEGMQ VGYSGLMSSL TQIGKGNISL
TKIYISGNDV NFTGFARTPD VVPSWIQSFE SELHLVGRTF AQLNIKTDEK GVVSFTLNTT
VSKESNE
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