| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_06536 |
|---|
| Symbol | |
|---|
| ID | 5557570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009784 |
|---|
| Strand | + |
|---|
| Start bp | 1689403 |
|---|
| End bp | 1691022 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640911009 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_001448654 |
|---|
| Protein GI | 156977748 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGGCT TCCGAGCCCT AAAAAGCGAA GTAATTATGT CAAATATGAC GAACGCCGCC
TCTCATACTC CTATTCAGGA GGCAGACTAT TCTGCGATCC ATCCTCCTTC CATTCTAAAG
CGCCTTGAAC TCACTAACCC AGTATTCTGG CTAAGTGGTA GCTTCCTCAC CGTGTTTGTA
TTGCTTGCTC TGACGAATAC AGACTCTCTG ACCGCAATGG TTAACGCAGG CTTCGGGTTT
GCGACTCAAT ACTTCGGTGC CTTCTGGCAA GTATTACTCC TTCTGAATTT CCTTATTGGT
TTGGCTATTG CGCTTGGTCG TACGGGTTAC GTGCGCTTGG GTGGTTTAGC GAAACCGGAT
ATCGATACCT TTAAATGGTT GTCGATCGTA CTTTGTACCC TACTCGCGGG TGGCGGTGTT
TTCTGGGCTG CAGCTGAGCC TATCGCTCAC TTTGTTTCTG CGCCACCGCT ATATGGTGAA
GCTTCACCAA AAGCTTCTGC AATCAATGCA CTTTCTCAGT CTTTCATGCA CTGGGGCTTC
CTTGCTTGGG CAATCTTAGG TTGTCTTTCT TCTGTGGTTT TGATGCACCT TCACTACGAT
AAGGGCTTAC CACTTAAACC ACGTACTCTG CTCTATCCTG TGTTTGGCAA CAAGGCTATT
AACGGTTGGA TTGGTGATGT TACAGACGCC TGCAGCATCG TTGCCGTTGC GGCAGGTACC
ATTGGCCCTA TCGGCTTCTT AGGTCTACAG ATCAGTTACG CGTTGAACTC GCTATTTGGC
TTGCCAGATA CCTTCATCAC CCAAAGCATA GTGATTGTAG CTGCAATTCT AATGTACACA
TTGTCAGCAC TAAGCGGCGT GAGCAAAGGC ATTCAGCTTG TTAGCCGTTA CAACATCGTG
TTGTCTGTGG CTTTGATCGG TTACATCCTC GTTTTCGGGC CAACCAGCTT TATTGTTGAT
GGTTATGTAC AGGGTATTGG CCGCATGGTC GATAACTTCT TCCCAATGGC ACTGTATCGT
GGCGACACGG AGTGGCTAAG TTGGTGGACC GTCTTCTTCT GGGGCTGGTT CATTGGTTAT
GGCCCGATGA TGGCAATCTT CATCGCGCGT ATCTCACGTG GCCGCACTAT CCGTCAGTTG
ATCCTGTCTA TCAGCATCGC TGCGCCTTTG ATCACCTGCT TCTGGTTCAG CATTGTTGGC
GGCAGTGGTT TGGCGTTCGA TCTAGAAAAC CCAGGTTTGA TTTCATCGGC ATTTGAGGGC
TTTAACTTGC CTGCCGTTCT GCTTGCGATT ACTTCTGAGC TGCCTTTCCC AATGGTAATT
TCGGTATTGT TCTTGATCCT GACTACGACG TTTATCGTGA CAACCGGTGA CTCGATGACG
TACACCATCA GTGTGGTAAT GACAGGCTCT ACTGAACCCA ATGCCGTGAT TCGCTCATTC
TGGGGCTTAA TGATGGGTAT CGTGGCTATT GCGCTTATCT CGATGGGCTC AGGTGGTATC
TCTGCATTGC AGTCTTTCAT CGTAATTACT GCCGTGCCTG TGTCTTTCAT ATTGCTACCA
AGCATTTGGA AAGCGCCGAG CATCGCGAAC CACATGGCGA AAGAGCAAGG TTTGGTTTAA
|
|---|
| Protein sequence | MHGFRALKSE VIMSNMTNAA SHTPIQEADY SAIHPPSILK RLELTNPVFW LSGSFLTVFV
LLALTNTDSL TAMVNAGFGF ATQYFGAFWQ VLLLLNFLIG LAIALGRTGY VRLGGLAKPD
IDTFKWLSIV LCTLLAGGGV FWAAAEPIAH FVSAPPLYGE ASPKASAINA LSQSFMHWGF
LAWAILGCLS SVVLMHLHYD KGLPLKPRTL LYPVFGNKAI NGWIGDVTDA CSIVAVAAGT
IGPIGFLGLQ ISYALNSLFG LPDTFITQSI VIVAAILMYT LSALSGVSKG IQLVSRYNIV
LSVALIGYIL VFGPTSFIVD GYVQGIGRMV DNFFPMALYR GDTEWLSWWT VFFWGWFIGY
GPMMAIFIAR ISRGRTIRQL ILSISIAAPL ITCFWFSIVG GSGLAFDLEN PGLISSAFEG
FNLPAVLLAI TSELPFPMVI SVLFLILTTT FIVTTGDSMT YTISVVMTGS TEPNAVIRSF
WGLMMGIVAI ALISMGSGGI SALQSFIVIT AVPVSFILLP SIWKAPSIAN HMAKEQGLV
|
|---|
| |