Gene VIBHAR_06536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_06536 
Symbol 
ID5557570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand
Start bp1689403 
End bp1691022 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content49% 
IMG OID640911009 
Productcholine/carnitine/betaine transporter 
Protein accessionYP_001448654 
Protein GI156977748 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGGCT TCCGAGCCCT AAAAAGCGAA GTAATTATGT CAAATATGAC GAACGCCGCC 
TCTCATACTC CTATTCAGGA GGCAGACTAT TCTGCGATCC ATCCTCCTTC CATTCTAAAG
CGCCTTGAAC TCACTAACCC AGTATTCTGG CTAAGTGGTA GCTTCCTCAC CGTGTTTGTA
TTGCTTGCTC TGACGAATAC AGACTCTCTG ACCGCAATGG TTAACGCAGG CTTCGGGTTT
GCGACTCAAT ACTTCGGTGC CTTCTGGCAA GTATTACTCC TTCTGAATTT CCTTATTGGT
TTGGCTATTG CGCTTGGTCG TACGGGTTAC GTGCGCTTGG GTGGTTTAGC GAAACCGGAT
ATCGATACCT TTAAATGGTT GTCGATCGTA CTTTGTACCC TACTCGCGGG TGGCGGTGTT
TTCTGGGCTG CAGCTGAGCC TATCGCTCAC TTTGTTTCTG CGCCACCGCT ATATGGTGAA
GCTTCACCAA AAGCTTCTGC AATCAATGCA CTTTCTCAGT CTTTCATGCA CTGGGGCTTC
CTTGCTTGGG CAATCTTAGG TTGTCTTTCT TCTGTGGTTT TGATGCACCT TCACTACGAT
AAGGGCTTAC CACTTAAACC ACGTACTCTG CTCTATCCTG TGTTTGGCAA CAAGGCTATT
AACGGTTGGA TTGGTGATGT TACAGACGCC TGCAGCATCG TTGCCGTTGC GGCAGGTACC
ATTGGCCCTA TCGGCTTCTT AGGTCTACAG ATCAGTTACG CGTTGAACTC GCTATTTGGC
TTGCCAGATA CCTTCATCAC CCAAAGCATA GTGATTGTAG CTGCAATTCT AATGTACACA
TTGTCAGCAC TAAGCGGCGT GAGCAAAGGC ATTCAGCTTG TTAGCCGTTA CAACATCGTG
TTGTCTGTGG CTTTGATCGG TTACATCCTC GTTTTCGGGC CAACCAGCTT TATTGTTGAT
GGTTATGTAC AGGGTATTGG CCGCATGGTC GATAACTTCT TCCCAATGGC ACTGTATCGT
GGCGACACGG AGTGGCTAAG TTGGTGGACC GTCTTCTTCT GGGGCTGGTT CATTGGTTAT
GGCCCGATGA TGGCAATCTT CATCGCGCGT ATCTCACGTG GCCGCACTAT CCGTCAGTTG
ATCCTGTCTA TCAGCATCGC TGCGCCTTTG ATCACCTGCT TCTGGTTCAG CATTGTTGGC
GGCAGTGGTT TGGCGTTCGA TCTAGAAAAC CCAGGTTTGA TTTCATCGGC ATTTGAGGGC
TTTAACTTGC CTGCCGTTCT GCTTGCGATT ACTTCTGAGC TGCCTTTCCC AATGGTAATT
TCGGTATTGT TCTTGATCCT GACTACGACG TTTATCGTGA CAACCGGTGA CTCGATGACG
TACACCATCA GTGTGGTAAT GACAGGCTCT ACTGAACCCA ATGCCGTGAT TCGCTCATTC
TGGGGCTTAA TGATGGGTAT CGTGGCTATT GCGCTTATCT CGATGGGCTC AGGTGGTATC
TCTGCATTGC AGTCTTTCAT CGTAATTACT GCCGTGCCTG TGTCTTTCAT ATTGCTACCA
AGCATTTGGA AAGCGCCGAG CATCGCGAAC CACATGGCGA AAGAGCAAGG TTTGGTTTAA
 
Protein sequence
MHGFRALKSE VIMSNMTNAA SHTPIQEADY SAIHPPSILK RLELTNPVFW LSGSFLTVFV 
LLALTNTDSL TAMVNAGFGF ATQYFGAFWQ VLLLLNFLIG LAIALGRTGY VRLGGLAKPD
IDTFKWLSIV LCTLLAGGGV FWAAAEPIAH FVSAPPLYGE ASPKASAINA LSQSFMHWGF
LAWAILGCLS SVVLMHLHYD KGLPLKPRTL LYPVFGNKAI NGWIGDVTDA CSIVAVAAGT
IGPIGFLGLQ ISYALNSLFG LPDTFITQSI VIVAAILMYT LSALSGVSKG IQLVSRYNIV
LSVALIGYIL VFGPTSFIVD GYVQGIGRMV DNFFPMALYR GDTEWLSWWT VFFWGWFIGY
GPMMAIFIAR ISRGRTIRQL ILSISIAAPL ITCFWFSIVG GSGLAFDLEN PGLISSAFEG
FNLPAVLLAI TSELPFPMVI SVLFLILTTT FIVTTGDSMT YTISVVMTGS TEPNAVIRSF
WGLMMGIVAI ALISMGSGGI SALQSFIVIT AVPVSFILLP SIWKAPSIAN HMAKEQGLV