Gene VIBHAR_05265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_05265 
Symbol 
ID5556814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009784 
Strand- 
Start bp511779 
End bp512339 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content43% 
IMG OID640909742 
ProductRNA polymerase sigma factor SigZ 
Protein accessionYP_001447398 
Protein GI156976492 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02959] RNA polymerase sigma factor, SigZ family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACTG CTAACCTCGA ATCAATTTGG AGCGAATACG AACACGCTAT TCATGCGTTC 
TTGCGCTCTA AAGTCAGCAA TGAAGATGAT GTAGACGACT TAAAGCAAGA GATTTTACTT 
AAAACTTATC AAAACCTTGC GGATATTCGT GATGTATCTA GCGTCAAATC TTGGCTCTTC 
CAAATCGCTA ATAACGCCAT CATCGATTTC TACCGTAAAC GTGCTCGAAA TCAGCGTGAC 
AATGACCTGG TTGCTGACGA TCTTTGGTTT GAAGAACAAG AATCAAACCT GAAACAAGAA 
CTGTCAAAGT GCATTGCGCC GTTTGTGCAA GCATTACCAG ATGAGCAATC GCAACTGCTC 
TCTTCTATAG AGCTTGAAGG CATGAGCCAG AAGAAGTTGG CAGAAGAGCA AGGCATCAGC 
TACTCAACCC TCAAATCGCG CGTACAGAGA GGACGTGTCG AATTGAAAAA GCTATTTGAA 
GAATGTTGCA GTTTCTCGTT CGACAAACAA GGTCGTATGA CAGATTGCAA CCAAAACGGT 
GCTTCTTGCG ATAAATGTTG A
 
Protein sequence
MKTANLESIW SEYEHAIHAF LRSKVSNEDD VDDLKQEILL KTYQNLADIR DVSSVKSWLF 
QIANNAIIDF YRKRARNQRD NDLVADDLWF EEQESNLKQE LSKCIAPFVQ ALPDEQSQLL 
SSIELEGMSQ KKLAEEQGIS YSTLKSRVQR GRVELKKLFE ECCSFSFDKQ GRMTDCNQNG 
ASCDKC